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I am a researcher with the Institute for Information Sciences
of the French National Science Center Laboratory of Informatics "Gaspard Monge" (LIGM) Université Gustave Eiffel (previously called Université Paris EST - Marne-la-Vallée) Bât Copernic, 5 Bd Descartes Champs-sur-Marne, 77454 Marne-la-Vallée Phone: +33 1 60 95 77 49 E-mail: Room: 4B 105, bâtiment Copernic For encrypted mails, use my PGP public key (fingerprint 98D5 9418 8AEA 7C23 F535 F63C 2D85 72C3 95F6 6C5B). My research interests include
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| I am involved with the Peer Community In (PCI) Mathematical & Computational Biology (MCB) (see also this easy-to-understand presentation and this PDF addressing criticism) |
| Organizing Committee of RECOMB-CG 2019 |
| Program Committee of SOFSEM 2020 |
| Sudoku | A rule-based sudoku solver implementing the "transitive chain analysis" rule. |
| TransEd | A solver for the Transitivity Editing problem. |
| GCClust | A GUI-based solver for the Consensus Clustering problem. |
| 2LP | A solver for the Two-Layer Planarization problem (deprecated, update in progress). |
| EE | A solver for the Eulerian Extension problem (written in Java by Georg Hieronimus). |
| CoilCoater | A solver for the Colorful Independent Set problem (written by René v. Bevern). |
| Status Sequence Analyser | A program to reconstruct a caterpillar tree from a given "status"-sequence. |
| Genome Scaffolder | A program to join and overlap preassembled contigs in fasta format into scaffolds using paired end information given as a scaffold graph. Needs CPLEX. |
In 2017, I lectured on SCAFFOLDING at the University of Montpellier. [slides]
In 2018 and 2020, I lectured on algorithmic bioinformatics at ENS Cachan.
In 2022, I lectured on algorithmic bioinformatics at Université Paris Dauphine. [slides: part 1, part 2] coding project: description, test generator]
From 2022 to 2024, I helt a guest professorship at TU-Berlin, heading the Algorithms and Complexity group giving various bachelor and master courses.