Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::solv::DP::DP_Table< Graph > Member List

This is the complete list of members for scaffold::solv::DP::DP_Table< Graph >, including all inherited members.

clear() (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
construct_index(const VertexSet< Graph > &VSet) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
DP_Entries typedef (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >
DP_Table(const Instance< Graph > &_I, const VertexSet< Graph > &VSet) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
DP_Table(const Instance< Graph > &_I, const TOL::GraphVertexSet &VSet, TOL::VTranslateBoostTOL< Graph > *vtranslate) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
empty() const (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
forget_vertex(const Vertex< Graph > &v) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
forget_vertex_from_table(const byte &v_idx) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
forget_vertices(const VertexSet< Graph > &V) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
get_VSet(std::list< Vertex< Graph > > &l) const (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
index (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >
init_as_leaf() (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
intro_edge(const Edge< Graph > &e) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
intro_edge_to_table(byte u_idx, byte v_idx, const bool is_matching_edge, const EdgeName &en, const size_t weight) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
intro_edges(const std::list< Edge< Graph > > &E) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
intro_vertex(const Vertex< Graph > &v) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
intro_vertices(const VertexSet< Graph > &V) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
join(DP_Table &T) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
M_adj (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >
operator<< (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >friend
read_solution(DynProgSolution< std::greater< size_t > > &S) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
size() const (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
table (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >
unify_indices(const DP_Table &T) (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline
VertexIndex typedef (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >
~DP_Table() (defined in scaffold::solv::DP::DP_Table< Graph >)scaffold::solv::DP::DP_Table< Graph >inline