Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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This is the complete list of members for scaffold::UseCountedOrientedSequence, including all inherited members.
counter (defined in scaffold::UseCountedOrientedSequence) | scaffold::UseCountedOrientedSequence | |
OrientedSequence() (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | inline |
OrientedSequence(const OrientedSequence &os) (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | inline |
OrientedSequence(const std::string &_sequence, const std::string &_start=VertexName()) (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | inline |
reverse_complement(const VertexName &new_start_vertex=VertexName()) (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | inline |
sequence (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | |
start_vertex (defined in scaffold::OrientedSequence) | scaffold::OrientedSequence | |
UseCountedOrientedSequence(const OrientedSequence &os) (defined in scaffold::UseCountedOrientedSequence) | scaffold::UseCountedOrientedSequence | inline |