Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Member Functions | |
P_to_pc_map * | forget_vertex (const byte v_idx) |
P_to_pc_map * | intro_edge (const byte u_idx, const byte v_idx, const byte du, const byte dv, const EdgeName &en, const size_t weight) |
P_to_pc_map * | join (const P_to_pc_map &T, const DegMap &new_deg2) const |
void | merge (const PermissiveMatching &P, pc_to_sol *const pc) |
void | destructive_merge (P_to_pc_map &m) |
void | make_copy (P_to_pc_map &target) |
P_to_pc_map * | apply_permutation (const BytePermutation &perm) |
Friends | |
std::ostream & | operator<< (std::ostream &os, const P_to_pc_map &M) |