Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Macros | Typedefs | Functions
branching_vector.hpp File Reference
#include <vector>
#include <cmath>

Go to the source code of this file.

Macros

#define BRANCHING_NUMBER_PRECISION   5
 

Typedefs

typedef std::vector< unsigned > scaffolding::solv::BranchingVector
 a branching vector is a vector of numbers corresponding to the "progress" in each branch
 

Functions

float scaffolding::solv::CH_POLY (const BranchingVector &BV, const float var)
 
float scaffolding::solv::branching_number (const BranchingVector &BV)
 compute the branching number of a vector of parameter decreases
 

Detailed Description

computation of the branching number of a branching vector using code CC by Joseph, Chuang-Chieh Lin (lincc.nosp@m.@cs..nosp@m.ccu.e.nosp@m.du.t.nosp@m.w or josep.nosp@m.hccl.nosp@m.in@gm.nosp@m.ail..nosp@m.com)