Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::graph_infos::ComponentInfo< Graph > Member List

This is the complete list of members for scaffold::graph_infos::ComponentInfo< Graph >, including all inherited members.

add_edge(const Vertex< Graph > &u, const Vertex< Graph > &v)scaffold::graph_infos::ComponentInfo< Graph >inline
add_vertex(const Vertex< Graph > &u)scaffold::graph_infos::ComponentInfo< Graph >inline
delete_edge(const VertexPair< Graph > &uv, const bool is_bridge)scaffold::graph_infos::ComponentInfo< Graph >inline
gscaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
get()scaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
get_const() constscaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
get_num()scaffold::graph_infos::ComponentInfo< Graph >inline
get_num_const() const scaffold::graph_infos::ComponentInfo< Graph >inline
invalidate()scaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
is_valid() constscaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
num_is_valid() const scaffold::graph_infos::ComponentInfo< Graph >inline
payloadscaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
read_from_infos(const ComponentInfo< Graph > &infos, const Matching< Graph > &translate)scaffold::graph_infos::ComponentInfo< Graph >inline
read_from_split_off_component(const ComponentInfo< Graph > &info)scaffold::graph_infos::ComponentInfo< Graph >inline
StructuralInfo(const Graph &_g)scaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
StructuralInfo(const Graph &_g, const ComponentsAndNum< Graph > &_payload)scaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
up_to_datescaffold::graph_infos::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
update(const bool force=false)scaffold::graph_infos::ComponentInfo< Graph >inlinevirtual
update_disjoint_union(const ComponentInfo< Graph > &info, const Matching< Graph > &translate)scaffold::graph_infos::ComponentInfo< Graph >inline