Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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incident_matching_edge() :
scaffold::ScaffoldGraph
increment_priority() :
std::low_priority_queue< Element, Priority >
insert() :
std::low_priority_queue< Element, Priority >
,
std::set_queue< T, Priority, Compare >
Instance() :
scaffold::Instance
introduce_edge() :
scaffold::PermissiveMatching
invalidate() :
scaffold::graph_infos::StructuralInfo< Graph, Information >
,
scaffold::Solution< Compare >
invalidate_all() :
scaffold::graph_infos::GraphInfos< Graph >
is_acyclic() :
scaffold::graph_infos::GraphInfos< Graph >
is_acyclic_const() :
scaffold::graph_infos::GraphInfos< Graph >
is_bridge() :
scaffold::graph_infos::BridgeInfo< Graph >
,
scaffold::ScaffoldGraph
is_bridge_const() :
scaffold::graph_infos::BridgeInfo< Graph >
,
scaffold::ScaffoldGraph
is_identity() :
scaffold::PermissiveMatching
is_matching_edge() :
scaffold::ScaffoldGraph
is_max_deg_two() :
scaffold::graph_infos::GraphInfos< Graph >
is_max_deg_two_const() :
scaffold::graph_infos::GraphInfos< Graph >
is_max_deg_two_easy_cases() :
scaffold::graph_infos::GraphInfos< Graph >
is_on_alternating_cycle() :
scaffold::ScaffoldGraph
is_valid() :
scaffold::graph_infos::StructuralInfo< Graph, Information >
,
scaffold::normal_distribution
,
scaffold::Predicated_EdgeIter< Graph, Predicate, EdgeIt >
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1.8.10