Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Classes
scaffold_graph.hpp File Reference
#include "utils/predicates.hpp"
#include "utils/graph_typedefs.hpp"
#include "utils/scaffolding_typedefs.hpp"
#include "utils/graph_infos.hpp"
#include "utils/alternating_path.hpp"

Go to the source code of this file.

Classes

class  scaffold::ScaffoldGraph
 the main graph class More...
 

Detailed Description

implementation of the main graph class, managing everything related to the underlying graph and its matching