Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Types | |
typedef contained_filter< VertexSet< Graph > > | V_Filter |
typedef contained_filter< EdgeSet< Graph > > | E_Filter |
typedef filtered_graph< Graph, E_Filter, V_Filter > | Subgraph |
Public Member Functions | |
TD_Subgraph (const Graph &_super_g) | |
void | introduce_vertex (const Vertex< Graph > &v) |
void | forget_vertex (const Vertex< Subgraph > &u) |
void | introduce_edge (const Edge< Graph > &e) |
void | join (const TD_Subgraph< Graph > &h) |
Protected Attributes | |
const Graph & | super_g |
VertexSet< Graph > | introduced_vertices |
VertexSet< Graph > | forgotten_vertices |
EdgeSet< Graph > | introduced_edges |
V_Filter | vertex_filter |
E_Filter | edge_filter |
Subgraph | g |