Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
|
This is the complete list of members for scaffold::PermissiveMatching, including all inherited members.
introduce_edge(const byte u, const byte v) | scaffold::PermissiveMatching | inline |
is_identity() const | scaffold::PermissiveMatching | inline |
merge_with(const PermissiveMatching &P, const std::bitset< ARRAY_LENGTH > °1_in_both) | scaffold::PermissiveMatching | inline |
operator size_t() const | scaffold::PermissiveMatching | inline |
operator<< (defined in scaffold::PermissiveMatching) | scaffold::PermissiveMatching | friend |
operator[](const byte i) const | scaffold::PermissiveMatching | inline |
operator[](const byte i) | scaffold::PermissiveMatching | inline |
PermissiveMatching(const unordered_map< byte, byte > *edges=NULL) | scaffold::PermissiveMatching | inline |
PermissiveMatching(const PermissiveMatching &P) | scaffold::PermissiveMatching | inline |
permute(const BytePermutation &perm) | scaffold::PermissiveMatching | inline |
~PermissiveMatching() | scaffold::PermissiveMatching | inline |