Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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This is the complete list of members for scaffold::MatrixEntry, including all inherited members.
append_edge(const EdgeName &e, const size_t _weight=0) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
clear() (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
edges (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | protected |
get_edges() const (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
has_no_edges() (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
is_undefined() const (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
join(const MatrixEntry &ME) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
MatrixEntry(const MatrixEntry &E) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
MatrixEntry(const size_t _weight=SIZE_MAX) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
MatrixEntry(const EdgeName &e, const size_t _weight=SIZE_MAX) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
operator+(const MatrixEntry &ME) const (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
operator+=(const MatrixEntry &ME) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
operator=(const MatrixEntry &ME) (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
set_undefined() (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry | inline |
weight (defined in scaffold::MatrixEntry) | scaffold::MatrixEntry |