Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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#include <list>
#include <algorithm>
#include "utils/graph_typedefs.hpp"
#include "utils/graph_utils.hpp"
#include "utils/graph_infos.hpp"
#include "utils/solution.hpp"
#include "utils/scaffolding_typedefs.hpp"
#include "utils/scaffolding_utils.hpp"
#include "utils/scaffold_graph.hpp"
Go to the source code of this file.
Classes | |
class | scaffold::Instance |
an instance is a ScaffoldGraph with given path- & cycle- numbers and a solution to keep track of deleted edges More... | |
instance class enriching ScaffoldGraph with solutions