Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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c
f
g
h
i
l
m
o
p
r
s
t
Here is a list of all documented file members with links to the documentation:
- c -
contains() :
utils.hpp
cut_off :
command_line.hpp
cycles :
command_line.hpp
- f -
file_exists() :
utils.hpp
- g -
get_cycles() :
profiling.hpp
get_option() :
command_line.hpp
- h -
hamming_distance() :
string_utils.hpp
handle_options() :
command_line.hpp
hash_value() :
utils.hpp
- i -
ignore_contig_jumps :
command_line.hpp
in_graph_filename :
command_line.hpp
in_seq_filename :
command_line.hpp
- l -
levenshtein_distance() :
string_utils.hpp
- m -
merge_strings() :
string_utils.hpp
merge_strings_segfault() :
string_utils.hpp
multi_take_all :
command_line.hpp
- o -
objects :
command_line.hpp
operator&=() :
utils.hpp
operator<<() :
utils.hpp
operator^=() :
utils.hpp
options :
command_line.hpp
out_graph_filename :
command_line.hpp
out_model_filename :
command_line.hpp
out_seq_filename :
command_line.hpp
- p -
pareto_le() :
utils.hpp
paths :
command_line.hpp
preprocess :
command_line.hpp
- r -
read_single_number() :
string_utils.hpp
reverse() :
utils.hpp
- s -
skip_all() :
string_utils.hpp
skip_to() :
string_utils.hpp
- t -
trim() :
string_utils.hpp
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