Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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This is the complete list of members for scaffold::LazyCyclesBlockCallback, including all inherited members.
build_auxgraph(const EdgeVarMap &var_map, AuxGraph &aux, TranslateMatrix &translate_layer) (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | |
compute_startpoints(const TranslateMatrix &translate_layer, VertexSet< AuxGraph > &startpoints) (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | |
duplicateCallback() const (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | inline |
forbid_cycles_in_y() (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | |
forbid_invalid_jumps() (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | |
LazyCyclesBlockCallback(IloEnv env, const var_collection_multi &_vars, callback_statistics &_stats) (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback | inline |
main() (defined in scaffold::LazyCyclesBlockCallback) | scaffold::LazyCyclesBlockCallback |