Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Classes
scoring.hpp File Reference
#include "utils/predicates.hpp"

Go to the source code of this file.

Classes

struct  scaffold::scoring::IdentityScore< Element >
 a scoring function for a pair of something and unsigned that just returns the unsigned More...
 
struct  scaffold::scoring::DistanceScore< Element >
 a scoring function returning the distance to a reference score given at construction More...
 
struct  scaffold::scoring::PredicatedDistanceScore< Element, Predicate >
 a scoring returning the distance to a reference score if a predicate evaluates to true and UINT_MAX otherwise More...
 

Detailed Description

collection of scoring functions