Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Member Functions | Friends | List of all members
scaffold::solv::d_to_P_map Class Reference
Inheritance diagram for scaffold::solv::d_to_P_map:

Public Member Functions

d_to_P_mapforget_vertex (const byte v_idx)
 
d_to_P_mapintro_edge (byte u_idx, byte v_idx, const bool mu, const bool mv, const bool mu_old, const bool mv_old, const bool is_matching_edge, const EdgeName &en, const size_t weight)
 
d_to_P_mapjoin (const d_to_P_map &T, const DegMap &old_M, const DegMap &T_M)
 
void merge (const DegMap &d, P_to_pc_map *const Ppc)
 
void make_copy (d_to_P_map &target)
 
d_to_P_mapapply_permutation (const BytePermutation &perm)
 

Friends

std::ostream & operator<< (std::ostream &os, const d_to_P_map &M)
 

The documentation for this class was generated from the following file: