Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
phylo::PhyloNet Member List

This is the complete list of members for phylo::PhyloNet, including all inherited members.

add_arc(const InternVertexPair &e) (defined in phylo::PhyloNet)phylo::PhyloNetinline
add_arc(const InternVertex &u, const InternVertex &v) (defined in phylo::PhyloNet)phylo::PhyloNetinline
add_vertex(const InternVertex &parent, const size_t idx=0, const std::string &name="") (defined in phylo::PhyloNet)phylo::PhyloNetinline
add_vertex(const std::list< InternVertex > &parents, const size_t idx=0, const std::string &name="") (defined in phylo::PhyloNet)phylo::PhyloNetinline
Arc typedef (defined in phylo::PhyloNet)phylo::PhyloNet
delete_vertex(const InternVertex &v) (defined in phylo::PhyloNet)phylo::PhyloNetinline
get_leaves() const (defined in phylo::PhyloNet)phylo::PhyloNetinline
get_name(const InternVertex &v) const (defined in phylo::PhyloNet)phylo::PhyloNetinline
get_network() const (defined in phylo::PhyloNet)phylo::PhyloNetinline
get_parents(const InternVertex &u) const (defined in phylo::PhyloNet)phylo::PhyloNetinline
get_root() const (defined in phylo::PhyloNet)phylo::PhyloNetinline
InEdgeIter typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InEdgeIterRange typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InternalNet typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InternVertex typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InternVertexList typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InternVertexPair typedef (defined in phylo::PhyloNet)phylo::PhyloNet
InternVertexSet typedef (defined in phylo::PhyloNet)phylo::PhyloNet
make_leaf(const InternVertex &v, const std::string &name) (defined in phylo::PhyloNet)phylo::PhyloNetinline
net (defined in phylo::PhyloNet)phylo::PhyloNet
num_edges() const (defined in phylo::PhyloNet)phylo::PhyloNetinline
num_vertices() const (defined in phylo::PhyloNet)phylo::PhyloNetinline
OutEdgeIter typedef (defined in phylo::PhyloNet)phylo::PhyloNet
OutEdgeIterRange typedef (defined in phylo::PhyloNet)phylo::PhyloNet
root (defined in phylo::PhyloNet)phylo::PhyloNetprotected
set_root(const size_t idx=0) (defined in phylo::PhyloNet)phylo::PhyloNetinline