Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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#include "utils/predicates.hpp"
Go to the source code of this file.
Classes | |
struct | scaffold::scoring::IdentityScore< Element > |
a scoring function for a pair of something and unsigned that just returns the unsigned More... | |
struct | scaffold::scoring::DistanceScore< Element > |
a scoring function returning the distance to a reference score given at construction More... | |
struct | scaffold::scoring::PredicatedDistanceScore< Element, Predicate > |
a scoring returning the distance to a reference score if a predicate evaluates to true and UINT_MAX otherwise More... | |
collection of scoring functions