Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::ComponentInfo< Graph > Member List

This is the complete list of members for scaffold::ComponentInfo< Graph >, including all inherited members.

add_edge(const Vertex< Graph > &u, const Vertex< Graph > &v) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
add_vertex(const Vertex< Graph > &u) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
delete_edge(const bool is_bridge) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
g (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
get() (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
get_const() const (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
get_num() (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
get_num_const() const (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
invalidate() (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
is_valid() const (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
num_is_valid() const (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
payload (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
read_from_infos(const ComponentInfo< Graph > &infos, const Matching< Graph > &translate) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
read_from_split_off_component(const ComponentInfo< Graph > &info) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline
StructuralInfo(const Graph &_g) (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
StructuralInfo(const Graph &_g, const ComponentsAndNum< Graph > &_payload) (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >inline
up_to_date (defined in scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >)scaffold::StructuralInfo< Graph, ComponentsAndNum< Graph > >protected
update(const bool force=false) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inlinevirtual
update_disjoint_union(const ComponentInfo< Graph > &info) (defined in scaffold::ComponentInfo< Graph >)scaffold::ComponentInfo< Graph >inline