Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Member Functions | |
void | update (const bool force=false) |
every property must have a function to update itself More... | |
void | read_from_infos (const MaxMultiplicityInfo &info) |
void | update_disjoint_union (const MaxMultiplicityInfo &info) |
void | add_edge (const Edge< RawScaffoldGraph > &e, const unsigned _multi=0) |
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StructuralInfo (const RawScaffoldGraph &_g) | |
constructor | |
StructuralInfo (const RawScaffoldGraph &_g, const unsigned &_payload) | |
constructor | |
void | invalidate () |
set the property to "not up-to-date" | |
bool | is_valid () const |
return whether the property is up-to-date | |
const unsigned & | get () |
get the current value of the property, updating if necessary | |
const unsigned & | get_const () const |
get the current value of the property without updating More... | |
Additional Inherited Members | |
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const RawScaffoldGraph & | g |
a reference to the graph | |
unsigned | payload |
the actual graph property | |
bool | up_to_date |
indicate whether the property needs to be recomputed due to changes in the graph | |
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inlinevirtual |
every property must have a function to update itself
updates can be refused (for example if the property is already up-to-date), but this refute can be overwritten with the "force" flag
Implements scaffold::graph_infos::StructuralInfo< RawScaffoldGraph, unsigned >.