Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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get() :
scaffold::graph_infos::StructuralInfo< Graph, Information >
get_best_bridge() :
scaffold::graph_infos::BridgeInfo< Graph >
get_cheapest_nonbridge() :
scaffold::graph_infos::BridgeInfo< Graph >
get_const() :
scaffold::graph_infos::StructuralInfo< Graph, Information >
get_edge_name() :
scaffold::ScaffoldGraph
get_edges() :
scaffold::ScaffoldGraph
get_FES() :
scaffold::graph_infos::GraphInfos< Graph >
get_FES_const() :
scaffold::graph_infos::GraphInfos< Graph >
get_graph() :
scaffold::ScaffoldGraph
get_graph_property() :
scaffold::ScaffoldGraph
get_incident() :
scaffold::ScaffoldGraph
get_incident_non_matching() :
scaffold::ScaffoldGraph
get_index_map() :
scaffold::ScaffoldGraph
get_infos() :
scaffold::ScaffoldGraph
get_matching() :
scaffold::ScaffoldGraph
get_matching_edges() :
scaffold::ScaffoldGraph
get_max() :
std::low_priority_queue< Element, Priority >
get_max_multiplicity() :
scaffold::ScaffoldGraph
get_max_non_contig_length() :
scaffold::ScaffoldGraph
get_min() :
std::low_priority_queue< Element, Priority >
get_min_element() :
std::set_queue< T, Priority, Compare >
get_neighbors() :
scaffold::ScaffoldGraph
get_non_bridges() :
scaffold::graph_infos::BridgeInfo< Graph >
get_non_bridges_const() :
scaffold::graph_infos::BridgeInfo< Graph >
get_non_matching_edges() :
scaffold::ScaffoldGraph
get_num() :
scaffold::graph_infos::ComponentInfo< Graph >
get_num_const() :
scaffold::graph_infos::ComponentInfo< Graph >
get_paths_and_cycles() :
scaffold::graph_infos::GraphInfos< Graph >
get_paths_and_cycles_const() :
scaffold::graph_infos::GraphInfos< Graph >
get_priority() :
std::set_queue< T, Priority, Compare >
GraphInfos() :
scaffold::graph_infos::GraphInfos< Graph >
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