Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::PermissiveMatching Member List

This is the complete list of members for scaffold::PermissiveMatching, including all inherited members.

introduce_edge(const byte u, const byte v)scaffold::PermissiveMatchinginline
is_identity() const scaffold::PermissiveMatchinginline
merge_with(const PermissiveMatching &P, const std::bitset< ARRAY_LENGTH > &deg1_in_both)scaffold::PermissiveMatchinginline
operator size_t() const scaffold::PermissiveMatchinginline
operator<< (defined in scaffold::PermissiveMatching)scaffold::PermissiveMatchingfriend
operator[](const byte i) const scaffold::PermissiveMatchinginline
operator[](const byte i)scaffold::PermissiveMatchinginline
PermissiveMatching(const unordered_map< byte, byte > *edges=NULL)scaffold::PermissiveMatchinginline
PermissiveMatching(const PermissiveMatching &P)scaffold::PermissiveMatchinginline
permute(const BytePermutation &perm)scaffold::PermissiveMatchinginline
~PermissiveMatching()scaffold::PermissiveMatchinginline