Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::solv::TD_Subgraph< Graph > Member List

This is the complete list of members for scaffold::solv::TD_Subgraph< Graph >, including all inherited members.

E_Filter typedef (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >
edge_filter (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
forget_vertex(const Vertex< Subgraph > &u) (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline
forgotten_vertices (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
g (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
introduce_edge(const Edge< Graph > &e) (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline
introduce_vertex(const Vertex< Graph > &v) (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline
introduced_edges (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
introduced_vertices (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
join(const TD_Subgraph< Graph > &h) (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline
Subgraph typedef (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >
super_g (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
TD_Subgraph(const Graph &_super_g) (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline
V_Filter typedef (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >
vertex_filter (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >protected
~TD_Subgraph() (defined in scaffold::solv::TD_Subgraph< Graph >)scaffold::solv::TD_Subgraph< Graph >inline