Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::MaxDegreeInfo< Graph > Member List

This is the complete list of members for scaffold::MaxDegreeInfo< Graph >, including all inherited members.

add_edge(const Vertex< Graph > &u, const Vertex< Graph > &v) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inline
delete_edge(const Vertex< Graph > &u, const Vertex< Graph > &v) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inline
g (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >protected
get() (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
get_const() const (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
invalidate() (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
is_valid() const (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
payload (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >protected
read_from_infos(const MaxDegreeInfo< Graph > &infos, const Matching< Graph > &translate) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inline
read_from_split_off_component(const MaxDegreeInfo< Graph > &info, const Matching< Graph > &translate) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inline
StructuralInfo(const Graph &_g) (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
StructuralInfo(const Graph &_g, const VertexAndDegree< Graph > &_payload) (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >inline
up_to_date (defined in scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >)scaffold::StructuralInfo< Graph, VertexAndDegree< Graph > >protected
update(const bool force=false) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inlinevirtual
update_disjoint_union(const MaxDegreeInfo< Graph > &info, const Matching< Graph > &translate) (defined in scaffold::MaxDegreeInfo< Graph >)scaffold::MaxDegreeInfo< Graph >inline