Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Member Functions | Public Attributes | Protected Attributes | List of all members
scaffold::MatrixEntry Class Reference

Public Member Functions

 MatrixEntry (const MatrixEntry &E)
 
 MatrixEntry (const size_t _weight=SIZE_MAX)
 
 MatrixEntry (const EdgeName &e, const size_t _weight=SIZE_MAX)
 
bool is_undefined () const
 
void set_undefined ()
 
bool has_no_edges ()
 
void clear ()
 
void append_edge (const EdgeName &e, const size_t _weight=0)
 
void join (const MatrixEntry &ME)
 
EdgeNameList get_edges () const
 
void operator= (const MatrixEntry &ME)
 
void operator+= (const MatrixEntry &ME)
 
MatrixEntry operator+ (const MatrixEntry &ME) const
 

Public Attributes

size_t weight
 

Protected Attributes

SharedGList edges
 

The documentation for this class was generated from the following file: