Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::solv::ilp::LazyCyclesBlockCallback Member List

This is the complete list of members for scaffold::solv::ilp::LazyCyclesBlockCallback, including all inherited members.

build_auxgraph(const EdgeVarMap &var_map, AuxGraph &aux, TranslateMatrix &translate_layer) (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallback
compute_startpoints(const TranslateMatrix &translate_layer, VertexSet< AuxGraph > &startpoints) (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallback
duplicateCallback() const (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallbackinline
forbid_cycles_in_y() (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallback
forbid_invalid_jumps() (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallback
LazyCyclesBlockCallback(IloEnv env, const var_collection_multi &_vars, callback_statistics &_stats) (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallbackinline
main() (defined in scaffold::solv::ilp::LazyCyclesBlockCallback)scaffold::solv::ilp::LazyCyclesBlockCallback