Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Types | Public Member Functions | Protected Attributes | List of all members
scaffold::solv::TD_Subgraph< Graph > Class Template Reference

Public Types

typedef contained_filter< VertexSet< Graph > > V_Filter
 
typedef contained_filter< EdgeSet< Graph > > E_Filter
 
typedef filtered_graph< Graph, E_Filter, V_FilterSubgraph
 

Public Member Functions

 TD_Subgraph (const Graph &_super_g)
 
void introduce_vertex (const Vertex< Graph > &v)
 
void forget_vertex (const Vertex< Subgraph > &u)
 
void introduce_edge (const Edge< Graph > &e)
 
void join (const TD_Subgraph< Graph > &h)
 

Protected Attributes

const Graph & super_g
 
VertexSet< Graph > introduced_vertices
 
VertexSet< Graph > forgotten_vertices
 
EdgeSet< Graph > introduced_edges
 
V_Filter vertex_filter
 
E_Filter edge_filter
 
Subgraph g
 

The documentation for this class was generated from the following file: