Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
|
Public Member Functions | |
void | build_auxgraph (const EdgeVarMap &var_map, AuxGraph &aux, TranslateMatrix &translate_layer) |
void | compute_startpoints (const TranslateMatrix &translate_layer, VertexSet< AuxGraph > &startpoints) |
unsigned | forbid_cycles_in_y () |
unsigned | forbid_invalid_jumps () |
void | main () |
IloCplex::CallbackI * | duplicateCallback () const |
LazyCyclesBlockCallback (IloEnv env, const var_collection_multi &_vars, callback_statistics &_stats) | |