Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Types | |
typedef PathsAndCycles | IndexType |
typedef PCMinMatrix< Compare > | entries_t |
Public Member Functions | |
TreeDPinfos (const size_t _max_paths) | |
void | combine_with_child (const TreeDPinfos &child, const bool is_matching_edge, const EdgeName &uv, const size_t uv_weight) |
Public Attributes | |
entries_t * | table |
size_t | childs_done |
const size_t | max_paths |
bool | seen_matching |
Compare | is_better |
Friends | |
std::ostream & | operator<< (std::ostream &os, const TreeDPinfos &infos) |