Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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_the_graph :
scaffold::ScaffoldGraph
container :
scaffold::predicates::ContainedPredicate< Element, Container >
,
scaffold::predicates::TargetContainedPredicate< Graph, Container >
entries :
scaffold::Solution< Compare >
errmsg :
except::read_error
g :
scaffold::graph_infos::StructuralInfo< Graph, Information >
,
scaffold::predicates::MatchingPredicate< Graph >
,
scaffold::predicates::TargetContainedPredicate< Graph, Container >
global_weight :
scaffold::Solution< Compare >
infos :
scaffold::ScaffoldGraph
invert :
scaffold::predicates::Predicate< Element >
line_no :
except::read_error
matched :
scaffold::ScaffoldGraph
matching_OK :
scaffold::predicates::TargetContainedPredicate< Graph, Container >
max_x :
diagonal_counter
max_y :
diagonal_counter
num_cycles :
scaffold::Instance
num_objects :
scaffold::Instance
num_paths :
scaffold::Instance
payload :
scaffold::graph_infos::StructuralInfo< Graph, Information >
solution :
scaffold::Instance
start_time :
timer
stop_time :
timer
up_to_date :
scaffold::graph_infos::StructuralInfo< Graph, Information >
x :
diagonal_counter
y :
diagonal_counter
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