Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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▼ io | |
read_adj_list.hpp | |
read_dimacs_graph.hpp | |
read_dot.hpp | |
read_fasta.hpp | |
read_phytree.hpp | |
scaffold_io.hpp | |
write_adj_list.hpp | |
write_dimacs_graph.hpp | |
write_dot.hpp | |
write_fasta.hpp | |
▼ preprocess | |
jump_preprocess.hpp | |
negative_length.hpp | |
pp_pendant_match.hpp | |
rp_contig_jumps.hpp | |
▼ solv | |
branching.hpp | |
degree_branching.hpp | |
dp_solution.hpp | |
dp_table.hpp | |
FES_branching.hpp | |
ilp_common.hpp | |
ilp_contig_jumps.hpp | |
ilp_model_multi.hpp | |
trees.hpp | |
tw_dp.hpp | |
▼ utils | |
adv_edge_iters.hpp | |
alternating_path.hpp | |
ambigous_paths.hpp | |
branching_vector.hpp | |
command_line.hpp | |
convert.hpp | |
exceptions.hpp | |
filters.hpp | |
graph_infos.hpp | |
graph_parameters.hpp | |
graph_typedefs.hpp | |
graph_utils.hpp | |
instance.hpp | |
low_priority_queue.hpp | |
min_matrix.hpp | |
normal_distribution.hpp | |
permissive_matching.hpp | |
predicates.hpp | |
profiling.hpp | |
scaffold_graph.hpp | |
scaffolding_typedefs.hpp | |
scaffolding_utils.hpp | |
scoring.hpp | |
set_queue.hpp | |
solution.hpp | |
string_utils.hpp | |
td_subgraph.hpp | |
unordered_pair.hpp | |
utils.hpp |