Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::UseCountedOrientedSequence Member List

This is the complete list of members for scaffold::UseCountedOrientedSequence, including all inherited members.

counter (defined in scaffold::UseCountedOrientedSequence)scaffold::UseCountedOrientedSequence
OrientedSequence() (defined in scaffold::OrientedSequence)scaffold::OrientedSequenceinline
OrientedSequence(const OrientedSequence &os) (defined in scaffold::OrientedSequence)scaffold::OrientedSequenceinline
OrientedSequence(const std::string &_sequence, const std::string &_start=VertexName()) (defined in scaffold::OrientedSequence)scaffold::OrientedSequenceinline
reverse_complement(const VertexName &new_start_vertex=VertexName()) (defined in scaffold::OrientedSequence)scaffold::OrientedSequenceinline
sequence (defined in scaffold::OrientedSequence)scaffold::OrientedSequence
start_vertex (defined in scaffold::OrientedSequence)scaffold::OrientedSequence
UseCountedOrientedSequence(const OrientedSequence &os) (defined in scaffold::UseCountedOrientedSequence)scaffold::UseCountedOrientedSequenceinline