Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Types | Public Member Functions | Public Attributes | Friends | List of all members
scaffold::solv::trees::TreeDPinfos< Compare > Struct Template Reference

Public Types

typedef PathsAndCycles IndexType
 
typedef PCMinMatrix< Compare > entries_t
 

Public Member Functions

 TreeDPinfos (const size_t _max_paths)
 
void combine_with_child (const TreeDPinfos &child, const bool is_matching_edge, const EdgeName &uv, const size_t uv_weight)
 

Public Attributes

entries_ttable
 
size_t childs_done
 
const size_t max_paths
 
bool seen_matching
 
Compare is_better
 

Friends

std::ostream & operator<< (std::ostream &os, const TreeDPinfos &infos)
 

The documentation for this struct was generated from the following file: