Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::graph_infos::BridgeInfo< Graph > Member List

This is the complete list of members for scaffold::graph_infos::BridgeInfo< Graph >, including all inherited members.

_get_best_bridge(const Scoring &score) const scaffold::graph_infos::BridgeInfo< Graph >inlineprotected
_get_cheapest_nonbridge(const EdgePredicate &predicate) const scaffold::graph_infos::BridgeInfo< Graph >inlineprotected
_get_non_bridges(std::list< WeightedBridge< Graph >> &non_bridges, const EdgePredicate &predicate) const scaffold::graph_infos::BridgeInfo< Graph >inlineprotected
_has_incident_nonbridge(const Vertex< Graph > &u) const scaffold::graph_infos::BridgeInfo< Graph >inlineprotected
add_edge(const Vertex< Graph > &u, const Vertex< Graph > &v)scaffold::graph_infos::BridgeInfo< Graph >inline
delete_edge(const VertexPair< Graph > &uv)scaffold::graph_infos::BridgeInfo< Graph >inline
gscaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >protected
get()scaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
get_best_bridge(const Scoring &score=Scoring())scaffold::graph_infos::BridgeInfo< Graph >inline
get_best_bridge(const Scoring &score=Scoring()) const scaffold::graph_infos::BridgeInfo< Graph >inline
get_cheapest_nonbridge(const EdgePredicate &predicate=EdgePredicate())scaffold::graph_infos::BridgeInfo< Graph >inline
get_cheapest_nonbridge(const EdgePredicate &predicate=EdgePredicate()) const scaffold::graph_infos::BridgeInfo< Graph >inline
get_const() constscaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
get_non_bridges(std::list< WeightedBridge< Graph >> &non_bridges, const EdgePredicate &predicate=EdgePredicate())scaffold::graph_infos::BridgeInfo< Graph >inline
get_non_bridges_const(std::list< WeightedBridge< Graph >> &non_bridges, const EdgePredicate &predicate=EdgePredicate()) const scaffold::graph_infos::BridgeInfo< Graph >inline
has_incident_nonbridge(const Vertex< Graph > &u)scaffold::graph_infos::BridgeInfo< Graph >inline
has_incident_nonbridge_const(const Vertex< Graph > &v) const scaffold::graph_infos::BridgeInfo< Graph >inline
invalidate()scaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
is_bridge(const Vertex< Graph > &u, const Vertex< Graph > &v)scaffold::graph_infos::BridgeInfo< Graph >inline
is_bridge_const(const Vertex< Graph > &u, const Vertex< Graph > &v) const scaffold::graph_infos::BridgeInfo< Graph >inline
is_valid() constscaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
payloadscaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >protected
read_from_infos(const BridgeInfo< Graph > &infos, const Matching< Graph > &translate)scaffold::graph_infos::BridgeInfo< Graph >inline
read_from_split_off_component(const BridgeInfo< Graph > &info, const Matching< Graph > &translate)scaffold::graph_infos::BridgeInfo< Graph >inline
StructuralInfo(const Graph &_g)scaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
StructuralInfo(const Graph &_g, const BridgeMap< Graph > &_payload)scaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >inline
up_to_datescaffold::graph_infos::StructuralInfo< Graph, BridgeMap< Graph > >protected
update(const bool force=false)scaffold::graph_infos::BridgeInfo< Graph >inlinevirtual
update_disjoint_union(const BridgeInfo< Graph > &info, const Matching< Graph > &translate)scaffold::graph_infos::BridgeInfo< Graph >inline