Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Member Functions | Friends | List of all members
scaffold::solv::DP::P_to_pc_map Class Reference
Inheritance diagram for scaffold::solv::DP::P_to_pc_map:

Public Member Functions

P_to_pc_mapforget_vertex (const byte v_idx)
 
P_to_pc_mapintro_edge (const byte u_idx, const byte v_idx, const byte du, const byte dv, const EdgeName &en, const size_t weight)
 
P_to_pc_mapjoin (const P_to_pc_map &T, const DegMap &new_deg2) const
 
void merge (const PermissiveMatching &P, pc_to_sol *const pc)
 
void destructive_merge (P_to_pc_map &m)
 
void make_copy (P_to_pc_map &target)
 
P_to_pc_mapapply_permutation (const BytePermutation &perm)
 

Friends

std::ostream & operator<< (std::ostream &os, const P_to_pc_map &M)
 

The documentation for this class was generated from the following file: