Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
scaffold::GraphInfos< Graph > Member List

This is the complete list of members for scaffold::GraphInfos< Graph >, including all inherited members.

_get_paths_and_cycles(const unsigned cc) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inlineprotected
add_edge(const Vertex< Graph > &u, const Vertex< Graph > &v) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
add_vertex(const Vertex< Graph > &u) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
bridges (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >
comps (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >
delete_edge(const VertexPair< Graph > &uv) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
g (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >
get_FES() (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
get_FES_const() const (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
get_paths_and_cycles() (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
get_paths_and_cycles_const() const (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
GraphInfos(const Graph &_g, const bool update_values=false) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
GraphInfos(const Graph &_g, const GraphInfos &infos, const Matching< Graph > &translate) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
invalidate_all() (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
is_acyclic() (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
is_acyclic_const() const (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
is_max_deg_two() (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
is_max_deg_two_const() const (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
is_max_deg_two_easy_cases() const (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inlineprotected
max_deg (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >
read_from_infos(const GraphInfos< Graph > &infos, const Matching< Graph > &translate) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
read_from_split_off_component(const GraphInfos< Graph > &infos, const Matching< Graph > &translate) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
update_all(const bool force=false) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline
update_disjoint_union(const GraphInfos< Graph > &infos, const Matching< Graph > &translate) (defined in scaffold::GraphInfos< Graph >)scaffold::GraphInfos< Graph >inline