Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
|
#include <vector>
#include "utils/utils.hpp"
#include "utils/exceptions.hpp"
#include "utils/graph_typedefs.hpp"
#include "utils/graph_parameters.hpp"
#include "utils/scaffolding_typedefs.hpp"
#include "utils/predicates.hpp"
#include "utils/scoring.hpp"
Go to the source code of this file.
Classes | |
class | scaffold::graph_infos::StructuralInfo< Graph, Information > |
prototype class for structural graph properties More... | |
class | scaffold::graph_infos::ComponentInfo< Graph > |
a graph property for the number of connected components and a map of vertices to components (represented by unsigneds) More... | |
class | scaffold::graph_infos::MaxDegreeInfo< Graph > |
a graph property for the maximum degree in g More... | |
class | scaffold::graph_infos::BridgeInfo< Graph > |
a graph property for the set of bridges in g More... | |
struct | scaffold::graph_infos::GraphInfos< Graph > |
an accumulator class for different graph properties More... | |
Typedefs | |
template<class Graph > | |
using | scaffold::graph_infos::ComponentsAndNum = std::pair< ComponentMap< Graph >, unsigned > |
compute a variety of graph properties such as max degree, number of connected components, ...