Publications related to 'Program TreeFix-DTL' : TreeFix-DTL is a software which takes as input a species tree, as well as sequences of a gene family, to estimate a gene tree for this family, with an optimal recombination scenario. Available at
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Yi-Chieh Wu. Computational evolutionary genomics : phylogenomic models spanning domains, genes, individuals, and species. PhD thesis, Massachusetts Institute of Technology, U.S.A., 2014.
Keywords: duplication, from sequences, from species tree, lateral gene transfer, loss, phylogeny, Program TreeFix-DTL, reconstruction.