Publications related to 'Program MPNet' : MPNet is a Java program (using CPLEX or GLPK) which takes as input a phylogenetic network (e-newick format) and a set of aligned sequences associated to its leaves (fasta format), and computes the softwired and hardwired parsimony score of a phylogenetic network. The results can be displayed with GraphViz where each edge is labeled by the number of character changes. Available at
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Mareike Fischer, Leo van Iersel, Steven Kelk and Celine Scornavacca. On Computing The Maximum Parsimony Score Of A Phylogenetic Network. In SIDMA, Vol. 29(1):559-585, 2015.
Keywords: APX hard, cluster containment, explicit network, FPT, from network, from sequences, integer linear programming, level k phylogenetic network, NP complete, parsimony, phylogenetic network, phylogeny, polynomial, Program MPNet, reconstruction, software.