% This bibliography has been created by:
%    Thierry Lecroq
%    Christophe Hancart
%    Laboratoire d'Informatique de Rouen
%    Universite de Rouen
%    Facultes des Sciences et Techniques
%    76821 MONT-SAINT-AIGNAN CEDEX
%    Tel: (33) (0)2 35 14 70 27
%    Fax: (33) (0)2 35 14 67 63
%    e-mails: lecroq at monge.univ-mlv.fr
%             Christophe.Hancart at dir.univ-rouen.fr
% Other main contributors include:
%    Jan Holub
%    Stefano Lonardi
%    Laurent Mouchard
%    Mathieu Raffinot

% List of abbreviations
% The abbreviations are established by the International Standard ISO 4
% 'Documentation - Rules for the abbreviation of title words and
%  and titles of publications' developed by technical committee
% ISO/TC 46, 'Documentation'

% Journals
@STRING( acmcs     = "ACM Comp. Surv." )
@STRING( acmcompsys = "ACM Trans. Comput. Syst." )
@STRING( acmds     = "ACM Trans. Database Syst." )
@STRING( acmpls    = "ACM Trans. Program. Lang. Syst." )
@STRING( acta      = "Acta Inform." )
@STRING( aappmat   = "Adv. Appl. Math." )
@STRING( advmat    = "Adv. Math" )
@STRING( algo      = "Algorithmica" )
@STRING( aaprob    = "Ann. Appl. Probab." )
@STRING( adiscm    = "Ann. Discret. Math." )
@STRING( aprob     = "Ann. Probab." )
@STRING( astat     = "Ann. Stat." )
@STRING( atelecom  = "Ann. T{\'e}l{\'e}commun." )
@STRING( amcomp    = "Appl. Math. Comput." )
@STRING( acsc      = "Aust. Comput. Sci. Commun." )
@STRING( bioinfo   = "Bioinformatics" )
@STRING( bit       = "BIT" )
@STRING( bbms      = "Bull. Belg. Math. Soc." )
@STRING( beatcs    = "Bull. Eur. Assoc. Theor. Comput. Sci." )
@STRING( binfcyb   = "Bull. Inform. Cybern." )
@STRING( bmathbiol = "Bull. Math. Biol." )
@STRING( bmathstat = "Bull. Math. Stat." )
@STRING( byte      = "Byte" )
@STRING( cabios    = "Comput. Appl. Biosci." )
@STRING( canjm     = "Can. J. Math." )
@STRING( cacm      = "Commun. ACM" )
@STRING( complex   = "Complex Syst." )
@STRING( comput    = "Comput." )
@STRING( compj     = "Comput. J." )
@STRING( crasp     = "Comptes Rendus Acad. Sci. Paris" )
@STRING( craspi    = "Comptes Rendus Acad. Sci. Paris S{\'e}r. I Math." )
@STRING( databe    = "Database Eng." )
@STRING( dappmat   = "Discret. Appl. Math." )
@STRING( discmath  = "Discret. Math." )
@STRING( drdobbsj  = "Dr. Dobbs J." )
@STRING( elect     = "Electron." )
@STRING( foasco    = "Form. Asp. Comput." )
@STRING( finfo     = "Fundam. Inform." )
@STRING( gene      = "Gene" )
@STRING( gata      = "Gene Anal. Tech. Appl." )
@STRING( grapcomb  = "Graphs Comb." )
@STRING( ibmjrd    = "IBM J. Res. Dev." )
@STRING( icpp      = "ICPP" )
@STRING( ieeera    = "IEEE J. Robot. Automat." )
@STRING( ieeessc   = "IEEE J. Solid-State Circuits" )
@STRING( ieeeassp  = "IEEE Trans. Acoust. Speech Signal Process." )
@STRING( ieeetc    = "IEEE Trans. Comput." )
@STRING( ieeetit   = "IEEE Trans. Inf. Theory" )
@STRING( ieeekde   = "IEEE Trans. Knowl. Data Eng." )
@STRING( ieeepds   = "IEEE Trans. Parallel Distr. Syst." )
@STRING( ieeepami  = "IEEE Trans. Pattern Anal. Mach. Intell." )
@STRING( ieeese    = "IEEE Trans. Softw. Eng." )
@STRING( ieicetisd = "IEICE Trans. Inform. Syst. D" )
@STRING( infcomp   = "Inf. Comput." )
@STRING( infcont   = "Inf. Control" )
@STRING( ipl       = "Inf. Process. Lett." )
@STRING( ipm       = "Inf. Process. Manage." )
@STRING( infsci    = "Inf. Sci." )
@STRING( infosys   = "Inf. Syst." )
@STRING( ivlsij    = "Integr., The VLSI J." )
@STRING( ijac      = "Int. J. Algebr. Comput." )
@STRING( ijcommat  = "Int. J. Comput. Math." )
@STRING( ijmms     = "Int. J. Man-Mach. Stud." )
@STRING( ijpp      = "Int. J. Parallel Program." )
@STRING( ist       = "Issues Sci. Tech." )
@STRING( ianussr   = "Izv. Akad. Nauk SSSR Ser. Mat." )
@STRING( jalgo     = "J. Algorithms" )
@STRING( japrob    = "J. Appl. Probab" )
@STRING( jacm      = "J. Assoc. Comput. Mach." )
@STRING( jalc      = "J. Autom. Lang. Comb." )
@STRING( jautres   = "J. Autom. Reasoning" )
@STRING( jcmcc     = "J. Comb. Math. Comb. Comp." )
@STRING( jco       = "J. Comb. Optim." )
@STRING( jcta      = "J. Comb. Theory Ser. A" )
@STRING( jcompl    = "J. Complexity" )
@STRING( jcb       = "J. Comput. Bio." )
@STRING( jcss      = "J. Comput. Syst. Sci." )
@STRING( jda       = "J. Discret. Algorithms" )
@STRING( jfcs      = "J. Foudations Comp. Sc.." )
@STRING( jinfproc  = "J. Inform. Process." )
@STRING( jkiss     = "J. Korea Information Science Society" )
@STRING( jlogpro   = "J. Log. Program." )
@STRING( jmolbiol  = "J. Mol. Biol." )
@STRING( jmolevo   = "J. Mol. Evol." )
@STRING( jpdc      = "J. Parallel Distr. Comput." )
@STRING( jsmath    = "J. Sov. Math." )
@STRING( jsymcom   = "J. Symbol. Comput." )
@STRING( jtheobiol = "J. Theor. Biol." )
@STRING( kyber     = "Kybern." )
@STRING( macetr    = "Math. Cent. Tracts" )
@STRING( matsysthe = "Math. Syst. Theory" )
@STRING( methenzy  = "Methods Enzymol." )
@STRING( michmj    = "Mich. Math. J." )
@STRING( molbioevo = "Mol. Biol. Evol." )
@STRING( ngcomp    = "New Gener. Comput." )
@STRING( njc       = "Nordic J. Comput." )
@STRING( nvssmnk   = "Nor. Vidensk. Selsk. Skr. Mat. Nat. Kl." )
@STRING( nucacires = "Nucleic Acids Res." )
@STRING( pjmath    = "Pac. J. Math." )
@STRING( paracomp  = "Parallel Comput." )
@STRING( ppl       = "Parallel Process. Lett." )
@STRING( patrec    = "Pattern Recognit." )
@STRING( patreclet = "Pattern Recognit. Lett." )
@STRING( pams      = "Proc. Amer. Math. Soc." )
@STRING( pire      = "Proc. I.R.E." )
@STRING( pnasusa   = "Proc. Natl. Acad. Sci. U.S.A." )
@STRING( proteineng = "Protein Eng." )
@STRING( proteinssf = "PROTEINS: Struct., Funct. Genet." )
@STRING( pubmatdeb = "Publ. Math. Debr." )
@STRING( rairoit   = "RAIRO Inform. Th{\'e}or." )
@STRING( rairoita  = "RAIRO Inform. Th{\'e}or. Appl." )
@STRING( ranstralg = "Random Struct. Algorithms" )
@STRING( scp       = "Sci. Comp. Program." )
@STRING( science   = "Sci." )
@STRING( siamr     = "SIAM Rev." )
@STRING( sgfor     = "Semigroup Forum" )
@STRING( siamjadm  = "SIAM J. Algebr. Discret. Methods" )
@STRING( siappmat  = "SIAM J. Appl. Math." )
@STRING( sicomp    = "SIAM J. Comput." )
@STRING( sidm      = "SIAM J. Discret. Math." )
@STRING( sigactn   = "SIGACT News" )
@STRING( sigirf    = "SIGIR Forum" )
@STRING( sigplann  = "SIGPLAN Not." )
@STRING( spe       = "Softw. Pract. Exp." )
@STRING( smathd    = "Sov. Math. Dokl." )
@STRING( sphysd    = "Sov. Phys. Dokl." )
@STRING( strpro    = "Struct. Program." )
@STRING( tcs       = "Theor. Comput. Sci." )
@STRING( thcosy    = "Theor. Comput. Syst." )
@STRING( trbiocs   = "Trends Biochem. Sci." )
@STRING( tsi       = "Tech. Sci. Inform." )
@STRING( worpatinf = "World Pat. Inf." )

% Publishers
@STRING( acap      = "Academic Press" )
@STRING( acmp      = "ACM Press" )
@STRING( aw        = "Addison-Wesley" )
@STRING( caup      = "Cambridge University Press" )
@STRING( cup       = "Carleton University Press" )
@STRING( crcp      = "CRC Press Inc." )
@STRING( else      = "Elsevier" )
@STRING( ieeecsp   = "IEEE Computer Society Press" )
@STRING( irlp      = "IRL Press Limited" )
@STRING( noho      = "North-Holland" )
@STRING( oxup      = "Oxford University Press" )
@STRING( svb       = "Springer-Verlag, Berlin" )
@STRING( svs       = "Springer-Verlag, Singapore" )

% Conferences
@STRING( alenex    = "Algorithm Engineering and Experiments" )
@STRING( awoca     = "Australasian Workshop On Combinatorial Algorithms" )
@STRING( caap      = "Colloquium on Trees in Algebra and Programming" )
@STRING( caip      = "Computer Analysis of Images and Patterns" )
@STRING( cocoon    = "Annual International Conference on Computing and Combinatorics" )
@STRING( cpm       = "Annual Symposium on Combinatorial Pattern Matching" )
@STRING( dcc       = "Data Compression Conference" )
@STRING( esa       = "Annual European Symposium" )
@STRING( esop      = "European Symposium on Programming" )
@STRING( fct       = "Fundamental of Computation Theory" )
@STRING( focs      = "IEEE Annual Symposium on Foundations of Computer Science" )
@STRING( fsttcs    = "Conference on Foundations of Software Technology and Theoretical Computer Science" )
@STRING( icalp     = "International Colloquium on Automata, Languages and Programming" )
@STRING( icpr      = "International Conference on Pattern Recognition" )
@STRING( ifip      = "IFIP World Computer Congress" )
@STRING( isaac     = "International Symposium on Algorithms and Computation" )
@STRING( isca      = "International Symposium on Computer Architecture" )
@STRING( ismb      = "International Conference on Intelligent Systems for Molecular Biology" )
@STRING( iwdm      = "International Workshop on Database Machines" )
@STRING( jobim     = "Journ\'ees Ouvertes Biologie Informatique Math\'ematiques" )
@STRING( latin     = "Latin American Symposium" )
@STRING( mfcs      = "Symposium on Mathematical Foundations of Computer Science" )
@STRING( pods      = "ACM SIGACT-SIGMOD Symposium on Principles of Database Systems" )
@STRING( popl      = "Annual ACM Symposium on Principles of Programming Languages" )
@STRING( pscc      = "Prague Stringology Conference" )
@STRING( pscw      = "Prague Stringology Club Workshop" )
@STRING( pscw0     = "Prague Stringologic Club Workshop" )
@STRING( recomb    = "Annual International Conference on Computational Molecular Biology (RECOMB)" )
@STRING( sigir     = "International Conference on Research and Development in Information Retrieval" )
@STRING( soda      = "ACM-SIAM Annual Symposium on Discrete Algorithms" )
@STRING( spire     = "String Processing and Information Retrieval: A South American Symposium" )
@STRING( stacs     = "Annual Symposium on Theoretical Aspects of Computer Science" )
@STRING( stoc      = "ACM Symposium on the Theory of Computing" )
@STRING( swat      = "Scandinavian Workshop on Algorithm Theory" )
@STRING( tapsoft   = "Theory and Practice of Software Development" )
@STRING( vldb      = "International Conference on Very Large Data Bases" )
@STRING( wae       = "Workshop on Algorithm Engineering" )
@STRING( wads      = "Workshop on Algorithms and Data Structures" )
@STRING( wdag      = "Workshop on Distributed Algorithms" )
@STRING( wsp       = "South American Workshop on String Processing" )

% Addresses
@STRING( aarhus    = "Aarhus, Denmark" )
@STRING( amster    = "Amsterdam, The Netherlands" )
@STRING( arling    = "Arlington, VA" )
@STRING( asilo     = "Asilomar, CA" )
@STRING( caen      = "Caen, France" )
@STRING( camma     = "Cambridge, MA" )
@STRING( ctu       = "Czech Technical University, Prague, Czech Republic" )
@STRING( espoo     = "Espoo, Finland" )
@STRING( hunter    = "Hunter Valley, Australia" )
@STRING( london    = "London, UK" )
@STRING( lyon      = "Lyon, France" )
@STRING( montreal  = "Montr{\'e}al, Canada" )
@STRING( newy      = "New York, NY" )
@STRING( orlando   = "Orlando, FL" )
@STRING( padova    = "Padova, Italy" )
@STRING( perth     = "Perth, WA, Australia" )
@STRING( prague    = "Prague, Czech Republic" )
@STRING( read      = "Reading, MA" )
@STRING( recife    = "Recife, Brazil" )
@STRING( rutgers   = "Piscataway, NJ" )
@STRING( stlo      = "Saint Louis, MO" )
@STRING( frisco    = "San Francisco, CA" )
@STRING( stressa   = "Stresa, Italy" )
@STRING( tucson    = "Tucson, AZ" )
@STRING( warwick   = "Warwick University, UK" )

% Miscellaneous
@STRING( lnai      = "Lecture Notes in Artificial Intelligence" )
@STRING( lncs      = "Lecture Notes in Computer Science" )
@STRING( proc      = "Proceedings " )
@STRING( proct     = "Proceedings of the " )

% References

% AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

@ARTICLE( AR88,
 author = "I. J. Aalbersberg and G. Rozenberg",
 title = "Theory of traces",
 journal = tcs,
 volume = 60,
 number = 1,
 year = 1988,
 pages = "1--82",
)

@ARTICLE( AW86,
 author = "I. J. Aalbersberg and E. Welzl",
 title = "Trace languages defined by regular string languages",
 journal = rairoit,
 volume = 20,
 number = 2,
 year = 1986,
 pages = "103--119",
)

@PHDTHESIS( Abd96a,
 author = "S. Abdedda{\"\i}m",
 title = "Comparaison de s{\'e}quences biologiques",
 type = "Th{\`e}se de doctorat",
 school = "Universit{\'e} Paris 6",
 year = 1996,
)

@TECHREPORT( Abd96b,
 author = "S. Abdedda{\"\i}m",
 title = "Comparaison de s{\'e}quences biologiques",
 type = "Rapport",
 number = "Th96/09",
 institution = "LITP, Universit{\'e}s Paris 6 et 7",
 year = 1996,
)

@INPROCEEDINGS( Abd97,
 author = "S. Abdedda{\"\i}m",
 title = "On incremental computation of transitive closure and greedy alignment",
 booktitle = proct#"8th "#cpm,
 address = aarhus,
 editor = "A. Apostolico and J. Hein",
 series = lncs,
 number = 1264,
 publisher = svb,
 year = 1997,
 pages = "167--179",
)

@INPROCEEDINGS( Abd2000,
 author = "S. Abdedda{\"\i}m",
 title = "Algorithms and experiments on transitive closure, path cover, and multiple sequence alignment",
 booktitle = proct#"2nd "#alenex,
 address = frisco,
 year = 2000,
 pages = "157--169",
)

@ARTICLE( Abr87,
 author = "K. Abrahamson",
 title = "Generalized string matching",
 journal = sicomp,
 volume = 16,
 number = 6,
 year = 1987,
 pages = "1039--1051",
)

@INCOLLECTION( Aho80,
 author = "A. V. Aho",
 title = "Pattern matching in strings",
 booktitle = "Formal Language Theory: Perspectives and Open Problems",
 editor = "R. Book",
 publisher = acap,
 address = "London, U. K.",
 year = 1980,
 pages = "325--347",
)

@INCOLLECTION( Aho90,
 author = "A. V. Aho",
 title = "Algorithms for finding patterns in strings",
 booktitle = "Handbook of Theoretical Computer Science, Algorithms and complexity",
 volume = "A",
 editor = "J. van Leeuwen",
 publisher = else,
 address = amster,
 year = 1990,
 chapter= 5,
 pages = "255--300",
)

@ARTICLE( AC75,
 author = "A. V. Aho and M. J. Corasick",
 title = "Efficient string matching: an aid to bibliographic search",
 journal = cacm,
 volume = 18,
 number = 6,
 year = 1975,
 pages = "333--340",
)

@INPROCEEDINGS( AG85,
 author = "A. V. Aho and M. Ganapathy",
 title = "Efficient tree pattern matching: an aid to Code Generation",
 booktitle = proct#"12th "#popl,
 address = "New Orleans, LO",
 year = 1985,
 pages = "334--340",
)

@ARTICLE( AHU76,
 author = "A. V. Aho and D. S. Hirschberg and J. D. Ullman",
 title = "Bounds on the complexity of the longest common subsequence problem",
 journal = jacm,
 volume = 23,
 number = 1,
 year = 1976,
 pages = "1--12",
)

@BOOK( AHU74,
 author = "A. V. Aho and J. E. Hopcroft and J. D. Ullman",
 title = "The design and analysis of computer algorithms",
 publisher = aw,
 address = read,
 year = 1974,
)

@ARTICLE( AHU76b,
 author = "A. V. Aho and J. E. Hopcroft and J. D. Ullman",
 title = "On finding lowest common ancestors in trees",
 journal = sicomp,
 volume = 5,
 number = 1,
 year = 1976,
 pages = "115--132",
)

@BOOK( AHU83,
 author = "A. V. Aho and J. E. Hopcroft and J. D. Ullman",
 title = "Data structures and algorithms",
 publisher = aw,
 address = read,
 year = 1983,
)

@BOOK( AKW88,
 author = "A. V. Aho and B. W. Kernighan and P. J. Weinberger",
 title = "The {AWK} programming language",
 publisher = aw,
 address = read,
 year = 1988,
)

@ARTICLE( AP72,
 author = "A. V. Aho and T. G. Paterson",
 title = "A minimum distance error-correcting parser for context-free languages",
 journal = sicomp,
 volume = 1,
 number = 4,
 year = 1972,
 pages = "305--312",
)

@BOOK( ASU86,
 author = "A. V. Aho and R. Sethi and J. D. Ullman",
 title = "Compilers -- Principles, Techniques and Tools",
 publisher = aw,
 address = read,
 year = 1986,
)

@BOOK( AU77,
 author = "A. V. Aho and J. D. Ullman",
 title = "Principles of compiler design",
 publisher = aw,
 address = read,
 year = 1977,
)

@INPROCEEDINGS( Aku93,
 author = "T. Akutsu",
 title = "A linear time pattern matching algorithm between a string and a tree",
 booktitle = proct#"4th "#cpm,
 address = padova,
 editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
 series = lncs,
 number = 684,
 publisher = svb,
 year = 1993,
 pages = "1--10",
)

@INPROCEEDINGS( Aku94,
 author = "T. Akutsu",
 title = "Approximate string matching with don't care symbols",
 booktitle = proct#"5th "#cpm,
 address = asilo,
 editor = "M. Crochemore and D. Gusfield",
 series = lncs,
 number = 807,
 publisher = svb,
 year = 1994,
 pages = "240--249",
)

@ARTICLE( Aku95,
 author = "T. Akutsu",
 title = "Approximate string matching with don't care characters",
 journal = ipl,
 volume = 55,
 number = 5,
 year = 1995,
 pages = "235--239",
)

@INPROCEEDINGS( AKOF99,
 author = "T. Akutsu and K. Kanaya and A. Ohyama and A. Fujiyama",
 title = "Matching of Spots in {2D} Electrophoresis Images. Point Matching Under Non-uniform Distortions",
 booktitle = proct#"10th "#cpm,
 address = warwick,
 editor = "M. Crochemore and M. Paterson",
 series = lncs,
 number = 1645,
 publisher = svb,
 year = 1999,
 pages = "212--222",
)

@ARTICLE( Alb67,
 author = "C. N. Alberga",
 title = "String similarity and misspellings",
 journal = cacm,
 volume = 10,
 number = 5,
 year = 1967,
 pages = "302--313",
)

@INPROCEEDINGS( Ale94,
 author = "K. S. Alexander",
 title = "Shortest Common Superstring for Strings of Random Letters",
 booktitle = "5th "#cpm,
 address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  volume = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "164--172",
)

@ARTICLE( AKNW95,
  author = "F. Alizadeh and R. M. Karp and L. A. Newberg and D. K. Weisser",
  title = "Physical Mapping of Chromosomes: A Combinatorial Problem in Molecular Biology",
  journal = algo,
  volume = 13,
  number = "1/2",
  year = 1995,
  pages = "52--76",
)

@INPROCEEDINGS( ACR99,
  author = "C. Allauzen and M. Crochemore and M. Raffinot",
  title = "Factor oracle: a new structure for pattern matching",
  booktitle = "SOFSEM'99, Theory and Practice of Informatics",
  editor = "J. Pavelka and G. Tel and M. Bartosek",
  series = lncs,
  number = 1725,
  publisher = svb,
  year = 1999,
  pages = "291--306",
  address = "Milovy, Czech Republic",
)

@INPROCEEDINGS( AR2000,
  author = "C. Allauzen and M. Raffinot",
  title = "Simple Optimal String Matching Algorithm",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "364--374",
)

@ARTICLE( AR2000b,
  author = "C. Allauzen and M. Raffinot",
  title = "Simple Optimal String Matching Algorithm",
  journal = jalgo,
  volume = 36,
  number = 1,
  year = 2000,
  pages = "102--116",
)

@ARTICLE( All93,
  author = "L. Allison",
  title = "A Fast Algorithm for the Alignment of Three Strings",
  journal = jtheobiol,
  volume = 164,
  year = 1993,
  pages = "261--269",
)

@ARTICLE( All94,
  author = "L. Allison",
  title = "Using {Hirschberg}'s algorithm to generate random alignments of strings",
  journal = ipl,
  volume = 51,
  number = 5,
  year = 1994,
  pages = "251--255",
)

@TECHREPORT( All98,
  author = "L. Allison",
  title = "Information-theoretic sequence alignment.",
  institution = "School of Computer\_Science and Software\_Engineering, Monash University",
  number = "98/14",
  year = 1998,
)

@INPROCEEDINGS( AED98,
  author = "L. Allison and T. Edgoose and T. I. Dix",
  title = "Compression of strings with approximate repeats.",
  booktitle = proc#ismb,
  pages = "8--16",
  year = 1998,
)

@ARTICLE( AD86,
  author = "L. Allison and T. I. Dix",
  title = "A bit string longest common subsequence algorithm",
  journal = ipl,
  volume = 23,
  number = 6,
  year = 1986,
  pages = "305--310",
)

@ARTICLE( APD99,
  author = "L. Allison and D. Powell and T. I. Dix",
  title = "Compression and approximate matching.",
  journal = compj,
  volume = 42,
  number = 1,
  year = 1999,
  pages = "1--10",
)

@ARTICLE( AW94,
  author = "L. Allison and C. S. Wallace",
  title = "An information measure for the string to string correction problem with applications",
  journal = acsc,
  volume = 16,
  number = 1,
  year = 1994,
  pages = "659--668",
)

@TECHREPORT( AWY90,
  author = "L. Allison and C. S. Wallace and C. N. Yee",
  title = "Induction inference over macro--molecules",
  year = 1990,
  institution = "Monash University",
  type = "Report",
  number = "90/148",
)

@ARTICLE( AWY92,
  author = "L. Allison and C. S. Wallace and C. N. Yee",
  title = "Finite-state models in the alignment of macromolecules",
  journal = jmolevo,
  volume = 35,
  year = 1992,
  pages = "77--89",
)

@ARTICLE( AY90,
  author = "L. Allison and C. N. Yee",
  title = "Minimum message length encoding and the comparison of Macromolecules",
  journal = bmathbiol,
  volume = 52,
  year = 1990,
  pages = "431--453",
)

@ARTICLE( dAB93,
  author = "de Almeida, Jr, N. F. and V. C. Barbosa",
  title = "A string-matching algorithm for the {CREW PRAM}",
  journal = ipl,
  volume = 47,
  number = 5,
  year = 1993,
  pages = "257--259",
)

@INPROCEEDINGS( ABR2000,
  author = "A. Alstrup and G. S. Brodal and T. Rauhe",
  title = "Pattern Matching in Dynamic Texts",
  booktitle = proct#"11th "#soda,
  address = frisco,
  year = 2000,
  pages = "819--828",
)

@ARTICLE( AMM84,
  author = "H. Alt and K. Mehlhorn and J. I. Munro",
  title = "Partial match retrieval in implicit data structures",
  journal = ipl,
  volume = 19,
  number = 2,
  year = 1984,
  pages = "61--65",
)

@ARTICLE( Alt89,
  author = "S. F. Altschul",
  title = "Gap costs for multiple sequence alignment",
  journal = jtheobiol,
  volume = 138,
  year = 1989,
  pages = "297--309",
)

@ARTICLE( Alt91,
  author = "S. F. Altschul",
  title = "Amino acid substitution matrices from an information theoretic perspective",
  journal = jmolbiol,
  volume = 219,
  year = 1991,
  pages = "555--565",
)

@ARTICLE( Alt93,
  author = "S. F. Altschul",
  title = "A protein alignment scoring system sensitive to all evolutionary distances",
  journal = jmolevo,
  volume = 36,
  year = 1993,
  pages = "290--300",
)

@ARTICLE( ACL89,
  author = "S. F. Altschul and R. J. Carroll and D. J. Lipman",
  title = "Weights for data related by a tree",
  journal = jmolbiol,
  volume = 207,
  year = 1989,
  pages = "647--653",
)

@ARTICLE( AE86a,
  author = "S. F. Altschul and B. W. Erickson",
  title = "A Nonlinear Measure of Subalignment Similarity and its Signifiance Level",
  journal = bmathbiol,
  volume = 48,
  number = 5,
  year = 1986,
  pages = "617--632",
)

@ARTICLE( AE86b,
  author = "S. F. Altschul and B. W. Erickson",
  title = "Optimal Sequence Alignment Using Affine Gap Costs",
  journal = bmathbiol,
  volume = 48,
  number = 5,
  year = 1986,
  pages = "603--616",
)

@ARTICLE( AGMML90,
  author = "S. F. Altschul and W. Gish and W. Miller and E. W. Myers and D. J. Lipman",
  title = "A basic local alignment search tool",
  journal = jmolbiol,
  volume = 215,
  year = 1990,
  pages = "403--410",
)

@ARTICLE( AL89,
  author = "S. F. Altschul and D. J. Lipman",
  title = "Trees, stars, and multiple biological sequence alignment",
  journal = siappmat,
  volume = 49,
  year = 1989,
  pages = "197--209",
)

@ARTICLE( AL90,
  author = "S. F. Altschul and D. J. Lipman",
  title = "Protein database searches for multiple alignments",
  journal = pnasusa,
  volume = 87,
  year = 1990,
  pages = "5509--5513",
)

@ARTICLE( AMSZZML97,
  author = "S. F. Altschul and T. L. Madden and A. A. Schaffer and J. Zhang and Z. Zhang and W. Miller and D. J. Lipman",
  title = "Gapped {Blast} and {Psi-Blast}: a new generation of protein database search programs",
  journal = nucacires,
  volume = 25,
  year = 1997,
  pages = "3389--3402",
)

@TECHREPORT( Ami87,
  author = "A. Amir",
  title = "Multidimensional and relative approximate pattern matching",
  type = "Reports",
  number ="UMIACS-TR-87-41 and CS-TR-1912",
  institution = "Department of Computer Science and Institute for Advance Computer Studies, University of Maryland",
  year = 1987,
)

@UNPUBLISHED( Ami91,
  author = "A. Amir",
  title = "Multidimensional pattern matching",
  note = "Manuscript",
  year = 1991,
)

@ARTICLE( AAL97,
  author = "A. Amir and A. Apostolico and M. Lewenstein",
  title = "Inverse Pattern Matching",
  journal = jalgo,
  volume = 24,
  number = 2,
  year = 1997,
  pages = "325--339",
)

@INPROCEEDINGS( AALLL97,
  author = "A. Amir and Y. Aumann and G, Landau and M. Lewenstein and N. Lewenstein",
  title = "Pattern Matching with Swaps",
  booktitle = proct#"38th "#focs,
  address = "Miami Beach, FL",
  year = 1997,
  pages = "144--153",
)

@ARTICLE( AALLL2000,
  author = "A. Amir and Y. Aumann and G, Landau and M. Lewenstein and N. Lewenstein",
  title = "Pattern Matching with Swaps",
   journal = jalgo,
   volume = 37,
   number = 2,
   year = 2000,
   pages = "247--266",
)

@INPROCEEDINGS( AB92,
  author = "A. Amir and G. Benson",
  title = "Two-dimensional periodicity and its applications",
  booktitle = proct#"3rd "#soda,
  address = orlando,
  year = 1992,
  pages = "440--452",
)

@ARTICLE( AB98,
  author = "A. Amir and G. Benson",
  title = "Two-Dimensional Periodicity in Rectangular Arrays",
  journal = sicomp,
  volume = 27,
  number = 1,
  year = 1998,
  pages = "90--106",
)

@INPROCEEDINGS( ABF92,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Alphabet independent two dimensional matching",
  booktitle = proct#"24th "#stoc,
  address = "Victoria, Canada",
  publisher = acmp,
  year = 1992,
  pages = "59--68",
)

@TECHREPORT( ABF92b,
  author = "A. Amir and G. Benson and M. Farach",
  title = "The truth, the whole truth and nothing but the truth: alphabet independent 2-d witness table construction",
  type = "Report",
  number = "GIT-CC-92-51",
  institution = "Georgia Tech",
  year = 1992,
)

@INPROCEEDINGS( ABF93,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Optimal parallel two-dimensional pattern matching",
  booktitle = proct#"5th Annual ACM Symposium on Parallel Algorithms and Architectures",
  publisher = acmp,
  year = 1993,
  pages = "79--85",
)

@TECHREPORT( ABF93b,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Let Sleeping Files Lie: Pattern Matching in {Z}-Compressed Files",
  type = "Report",
  number = "GIT-CC-93-42",
  institution = "Georgia Tech",
  year = 1993, 
)

@ARTICLE( ABF94,
  author = "A. Amir and G. Benson and M. Farach",
  title = "An alphabet independent approach to two-dimensional pattern matching",
  journal = sicomp,
  volume = 23,
  number = 2,
  year = 1994,
  pages = "313--323",
)

@INPROCEEDINGS( ABF94b,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Let Sleeping Files Lie: Pattern Matching in {Z}-Compressed Files",
  booktitle = proct#"5th "#soda,
  address = arling,
  year = 1994,
  pages = "705--714",
)

@INPROCEEDINGS( ABF94c,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Optimal two-dimensional compressed matching",
  booktitle = proct#"21st "#icalp,
  address = "Jerusalem, Israel",
  editor = "S. Abiteboul and E. Shamir",
  series = lncs,
  volume = 820,
  year = 1994,
  pages = "215--226",
)

@ARTICLE( ABF96,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Let Sleeping Files Lie: Pattern Matching in {Z}-Compressed Files",
  journal = jcss,
  volume = 52,
  number = 2,
  year = 1996,
  pages = "299--307",
)

@ARTICLE( ABF97,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Optimal two-dimensional compressed matching",
  journal = jalgo,
  volume = 24,
  number = 2,
  year = 1997,
  pages = "354--379",
)

@ARTICLE( ABF98,
  author = "A. Amir and G. Benson and M. Farach",
  title = "Optimal Parallel Two Dimensional Text Searching on a {CREW PRAM}",
  journal = infcomp,
  volume = 144,
  number = 1,
  year = 1998,
  pages = "1--17",
)

@INPROCEEDINGS( ABL2000,
  author = "A. Amir and A. Butman and M. Lewenstein",
  title = "Real Scaled Matching",
  booktitle = proct#"11th "#soda,
  address = frisco,
  year = 2000,
  pages = "815--816",
)

@TECHREPORT( AC93,
  author = "A. Amir and G. C{\v a}linescu",
  title = "Faster Scaled Matching",
  type = "Report",
  number = "GIT-CC-93-40",
  institution = "Georgia Tech",
  year = 1993, 
)

@INPROCEEDINGS( AC96,
  author = "A. Amir and G. C{\v a}linescu",
  title = "Alphabet Independent and Dictionary Scaled Matching",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "320--334",
)

@ARTICLE( AC2000,
  author = "A. Amir and G. C{\v a}linescu",
  title = "Alphabet Independent and Dictionary Scaled Matching",
  journal = jalgo,
  volume = 36,
  number = 1,
  year = 2000,
  pages = "34--62",
)

@INPROCEEDINGS( AF91,
  author = "A. Amir and M. Farach",
  title = "Adaptative dictionary matching",
  booktitle = proct#"32nd "#focs,
  address = "San Juan, Puerto Rico",
  publisher = ieeecsp,
  year = 1991,
  pages = "760--766",
)

@INPROCEEDINGS( AF91b,
  author = "A. Amir and M. Farach",
  title = "Efficient 2-dimensional approximate matching of non-rectangular figures",
  booktitle = proct#"2nd "#soda,
  address = frisco,
  year = 1991,
  pages = "212--223",
)

@ARTICLE( AF92,
  author = "A. Amir and M. Farach",
  title = "Two-dimensional dictionary matching",
  journal = ipl,
  volume = 44,
  number = 5,
  year = 1992,
  pages = "233--239",
)

@ARTICLE( AF95,
  author = "A. Amir and M. Farach",
  title = "Efficient 2-dimensional approximate matching of half-rectangular figures",
  journal = infcomp,
  volume = 118,
  number = 1,
  year = 1995,
  pages = "1--11",
)

@INCOLLECTION( AF97,
  author = "A. Amir and M. Farach",
  title = "Two dimensional matching",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 9,
  pages = "267--292",
)

@ARTICLE( AFGGP94,
  author = "A. Amir and M. Farach and Z. Galil and R. Giancarlo and K. Park",
  title = "Fully dynamic dictionary matching",
  journal = jcss,
  volume = 49,
  number = 2,
  year = 1994,
  pages = "208--222",
)

@INPROCEEDINGS( AFILPS93,
  author = "A. Amir and M. Farach and R. Idury and La Poutr{\'e}, J. and A. Sch{\"a}ffer",
  title = "Improved dynamic dictionary matching",
  address = frisco,
  booktitle = proct#"4th "#soda,
  year = 1993,
  pages = "392--401",
)

@ARTICLE( AFILPS95,
  author = "A. Amir and M. Farach and R. Idury and La Poutr{\'e}, J. and A. Sch{\"a}ffer",
  title = "Improved dynamic dictionary matching",
  journal = infcomp,
  volume = 119,
  number = 2,
  year = 1995,
  pages = "258--282",
)

@INPROCEEDINGS( AFM92,
  author = "A. Amir and M. Farach and Y. Matias",
  title = "Efficient randomized dictionary matching algorithms",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "262--275",
)

@TECHREPORT( AFM93,
  author = "A. Amir and M. Farach and Y. Muthukrishnan",
  title = "Alphabet Dependence in Parametrized Matching",
  type = "Report",
  number = "GIT-CC-93-44",
  institution = "Georgia Tech",
  year = 1993, 
)

@ARTICLE( AFM94,
  author = "A. Amir and M. Farach and S. Muthukrishnan",
  title = "Alphabet dependence in parameterized matching",
  journal = ipl,
  volume = 49,
  number = 3,
  year = 1994,
  pages = "111--115",
)

@ARTICLE( AKLLLR2000,
  author = "A. Amir and D. Keselman and G. M. Landau and M. Lewenstein and N. Lewenstein and M. Rodeh",
  title = "Text Indexing and Dictionary Matching with One Error",
  journal = jalgo,
  volume = 37,
  number = 2,
  year = 2000,
  pages = "309--325",
)

@ARTICLE( AL91,
  author = "A. Amir and G. M. Landau",
  title = "Fast parallel and serial multidimensional approximate array matching",
  journal = tcs,
  volume = 81,
  number = 1,
  year = 1991,
  pages = "97--115",
)

@INPROCEEDINGS( ALLL98,
  author = "A. Amir and G. Landau and M. Lewenstein and N. Lewenstein",
  title = "Efficient Special Cases of Pattern Matching with Swaps",
  booktitle = proct#"9th "#cpm,
  address = rutgers,
  editor = "M. Farach-Colton",
  series = lncs,
  number = 1448,
  publisher = svb,
  year = 1998,
  pages = "209--220",
)

@ARTICLE( ALLL98b,
  author = "A. Amir and G. Landau and M. Lewenstein and N. Lewenstein",
  title = "Efficient Special Cases of Pattern Matching with Swaps",
  journal = ipl,
  volume = 68,
  number = 3,
  year = 1998,
  pages = "125--132",
)

@INPROCEEDINGS( ALS2000,
  author = "A. Amir and G. M. Landau and D. Sokol",
  title = "Inplace Run-Length $2d$ Compressed Search",
  booktitle = proct#"11th "#soda,
  address = frisco,
  year = 2000,
  pages = "817--818",
)

@INPROCEEDINGS( ALV90,
  author = "A. Amir and G. M. Landau and U. Vishkin",
  title = "Efficient pattern matching with scaling",
  booktitle = proct#"1st "#soda,
  address = frisco,
  year = 1990,
  pages = "344--457",
)

@ARTICLE( ALV92,
  author = "A. Amir and G. M. Landau and U. Vishkin",
  title = "Efficient pattern matching with scaling",
  journal = jalgo,
  volume = 13,
  number = 1,
  year = 1992,
  pages = "2--32",
)

@INPROCEEDINGS( ALL97,
  author = "A. Amir and M. Lewenstein and N. Lewenstein",
  title = "Pattern Matching In Hypertext",
  booktitle = proct#"5th "#wads,
  address = "Halifax, Nova Scotia, Canada",
  editor = "F. K. H. A. Dehne and A. Rau-Chaplin and J.-R. Sack and R. Tamassia",
  series = lncs,
  number = 1272,
  publisher = svb,
  year = 1997,
  pages = "160--173",
)

@ARTICLE( ALL2000,
  author = "A. Amir and M. Lewenstein and N. Lewenstein",
  title = "Pattern Matching in Hypertext",
  journal = jalgo,
  volume = 35,
  number = 1,
  year = 2000,
  pages = "82--99",
)

@INPROCEEDINGS( ALP2000,
  author = "A. Amir and M. Lewenstein and E. Porat",
  title = "Faster Algorithms for String Matching with $k$ Mismatches",
  booktitle = proct#"11th "#soda,
  address = frisco,
  year = 2000,
  pages = "794--803",
)

@INPROCEEDINGS( AHHP94,
  author = "A. Anderson and T. Hagerup and J. Hastad and O. Petersson",
  title = "The complexity of searching a sorted array of strings",
  booktitle = proct#"26th "#stoc,
  address = montreal,
  publisher = acmp,
  year = 1994,
  pages = "317--325",
)

@ARTICLE( AN93,
  author = "A. Andersson and S. Nilsson",
  title = "Improved behavior of tries by adaptive branching",
  journal = ipl,
  volume = 46,
  number = 6,
  year = 1993,
  pages = "295--300",
)

@INPROCEEDINGS( AN94,
  title = "Faster Searching in Tries and Quadtrees---An Analysis of Level Compression",
  author = "A. Andersson and S. Nilsson",
  booktitle = proct#"2nd "#esa,
  editor = "J. van Leeuwen",
  address = "Utrecht, The Netherlands",
  series = lncs,
  volume = 855,
  publisher = svb,
  year = 1994,
  pages = "82--93",
)

@INPROCEEDINGS( ALS96,
  author = "A. Andersson and N. J. Larsson and K. Swanson",
  title = "Suffix Trees on Words",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "102--115",
)

@ARTICLE( ALS99,
  author = "A. Andersson and N. J. Larsson and K. Swanson",
  title = "Suffix Trees on Words",
  journal = algo,
  volume = 23,
  number = 3,
  year = 1999,
  pages = "246--260",
)

@INPROCEEDINGS( ASA96,
  author = "K. Ando and M. Shishibori and J.-I. Aoe",
  title = "An efficient multi-attribute pattern matching machine",
  booktitle = proct#pscw0#"~'96",
  address = ctu,
  editor = "J. Holub",
  note = "Collaborative Report DC--96--10",
  year = 1996,
  pages = "1--14",
)

@INPROCEEDINGS( AIFA98,
  author = "K. Ando and K. Iwasaki and M. Fuketa and J.-I. Aoe",
  title = "A fast morphological analysis using the extended {AC} machine for oriental languages",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "1--13",
)

@MASTERSTHESIS( And93,
  author = "M. V. A. Andrade",
  title = "M{\'e}todos eficientes para reconhecimento de padr{\~o}es em Texto (in portuguese)",
  type = "Master Thesis",
  school = "UNICAMP, Campinas, Brazil",
  year = 1993,
)

@ARTICLE( And86,
  author = "G. Andrejkov{\'a}",
  title = "Systolic systems for the longest common subsequence problem",
  journal = "Computers and Artificial Intelligence",
  volume = 5,
  number = 3,
  year = 1986,
  pages = "199--212",
)

@INPROCEEDINGS( And98,
  author = "G. Andrejkov{\'a}",
  title = "The longest restricted common subsequence problem",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "14--25",
)

@INPROCEEDINGS( And99,
  author = "G. Andrejkov{\'a}",
  title = "The closest common subsequence problems",
  booktitle = proct#pscw#"~'99",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--99--05",
  year = 1999,
  pages = "1--15",
)

@INPROCEEDINGS( And2000,
  author = "G. Andrejkov{\'a}",
  title = "The Set-Set closest common subsequence problem",
  booktitle = proct#pscw#"~'2000, Bratislava, Slovakia",
  address = ctu,
  editor = "M. Bal{\'i}k and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--2000--03",
  year = 2000,
  pages = "1--12",
)

@ARTICLE( AFW93,
  author = "R. C. Angell and G. E. Freund and P. Willet",
  title = "Automatic spelling correction using a trigram measure",
  journal = ipm,
  volume = 19,
  year = 1993,
  pages = "255--261",
)

@INPROCEEDINGS( Ang79,
  author = "D. Angluin",
  title = "Finding patterns common to a set of strings",
  booktitle = proct#"11th "#stoc,
  address = "Atlanta, Georgia",
  publisher = acmp,
  year = 1979,
  pages = "130--141",
)

@ARTICLE( Ang80,
  author = "D. Angluin",
  title = "Finding patterns common to a set of strings",
  journal = jcss,
  volume = 21,
  number = 1,
  year = 1980,
  pages = "46--62",
)

@INPROCEEDINGS( AM97,
  author = "E. L. Anson and E. W. Myers",
  title = "{ReAligner}: {A} Program for Refining {DNA} Sequence Multi-Alignments",
  booktitle = proct#"1st "#recomb,
  address = "Santa Fe, NM",
  publisher = acmp,
  year = 1997,
  pages = "9--16",
)

@ARTICLE( Aoe89,
  author = "J.-I. Aoe",
  title = "An efficient implementation of string pattern matching machines for a finite number of keywords",
  journal = sigirf,
  year = 1989,
  pages = "22--33",
)

@ARTICLE( Aoe89b,
  author = "J.-I. Aoe",
  title = "An Efficient Implementation of Static String Pattern Matching Machines",
  journal = ieeese,
  volume = 15,
  number = 8,
  year = 1989,
  pages = "1010--1016",
)

@ARTICLE( Aoe89c,
  author = "J.-I. Aoe",
  title = "An Efficient Digital Search Algorithm by Using a Double-Array Structure",
  journal = ieeese,
  volume = 15,
  number = 9,
  year = 1989,
  pages = "1066--1077",
)

@BOOK( Aoe94,
  editor = "J.-I. Aoe",
  title = "String pattern matching strategies",
  publisher = ieeecsp,
  year = 1994,
)

@ARTICLE( AMS92,
  author = "J.-I Aoe and K. Morimoto and T. Sato",
  title = "An Efficient Implementation of Trie Structure",
  journal = spe,
  volume = 22,
  number = 9,
  year = 1992,
  pages = "695--721",
)

@ARTICLE( AYS84,
  author = "J.-I. Aoe and Y. Yamamoto and R. Shimada",
  title = "A method for improving string pattern matching machines",
  journal = ieeese,
  volume = 10,
  number = 1,
  year = 1984,
  pages = "116--120",
)

@INPROCEEDINGS( AYS85,
  author = "J.-I. Aoe and Y. Yamamoto and R. Shimada",
  title = "An efficient implementation of static string pattern matching machines",
  booktitle = proct#"1st International Conference on Supercomputing",
  address = "St. Petersburg, FL",
  year = 1985,
  pages = "491--498",
)

@INPROCEEDINGS( AYS88,
  author = "J.-I. Aoe and Y. Yasutome and T. Sato",
  title = "An efficient digital search algorithm by using a double-array structure",
  booktitle = proct#"12th International Conference on Computer Software and Applications",
  address = "Chicago, IL",
  year = 1988,
  pages = "472--479",
)

@INPROCEEDINGS( Apo79,
  author = "A. Apostolico",
  title = "Linear Pattern Matching and Problems of Data Compression",
  booktitle = "IEEE International Symposium on Information Theory",
  year = 1979,
)

@ARTICLE( Apo84,
  author = "A. Apostolico",
  title = "On context-constrained squares and repetitions in a string",
  journal = rairoit,
  volume = 18,
  number = 2,
  year = 1984,
  pages = "147--159",
)

@INCOLLECTION( Apo85,
  author = "A. Apostolico",
  title = "The myriad virtues of suffix trees",
  booktitle = "Combinatorial Algorithms on Words",
  series = "NATO Advanced Science Institutes, Series F",
  volume = 12,
  editor = "A. Apostolico and Z. Galil",
  publisher = svb,
  year = 1985,
  pages = "85--96",
)

@ARTICLE( Apo86,
  author = "A. Apostolico",
  title = "Improving the worst-case performance of the {Hunt-Szymanski} strategy for the longest common subsequence of two strings",
  journal = ipl,
  volume = 23,
  number = 2,
  year = 1986,
  pages = "63--69",
)

@TECHREPORT( Apo86b,
  author = "A. Apostolico",
  title = "Parallel Log--Time Construction of Suffix Trees",
  type = "Report",
  number = "CSD-TR-632",
  institution = "Purdue Universsity",
  year = 1986,
)

@ARTICLE( Apo87,
  author = "A. Apostolico",
  title = "Remark on the {Hsu-Du} new algorithm for the longest common subsequence problem",
  journal = ipl,
  volume = 25,
  number = 4,
  year = 1987,
  pages = "235--236",
)

@TECHREPORT( Apo90,
  author = "A. Apostolico",
  title = "Optimal parallel detection of squares in string",
  type = "Reports",
  number = "CSD-TR-932 and CSD-TR-1012",
  institution = "Purdue University",
  year = 1990,
)

@ARTICLE( Apo92,
  author = "A. Apostolico",
  title = "Fast parallel detection of squares in strings",
  journal = algo,
  number = 4,
  volume = 8,
  year = 1992,
  pages = "285--319",
)

@ARTICLE( Apo93,
  author = "A. Apostolico",
  title = "Efficient {CRCW-PRAM} algorithms for universal substring searching",
  journal = tcs,
  volume = 108,
  number = 2,
  year = 1993,
  pages = "331--344",
)

@INCOLLECTION( Apo97,
  author = "A. Apostolico",
  title = "String Editing and Longest Common Subsequences",
  booktitle = "Handbook of Formal Languages",
  volume = "2 Linear Modeling: Background and Application",
  editor = "G. Rozenberg and A. Salomaa",
  publisher = svb,
  year = 1997,
  chapter = 8,
  pages = "361--398",
)

@INCOLLECTION( Apo97b,
  author = "A. Apostolico",
  title = "On-line string searching",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 3,
  pages = "89--122",
)

@INCOLLECTION( Apo98,
  author = "A. Apostolico",
  title = "General Pattern Matching",
  booktitle = "Algorithms and Theory of Computation Handbook",
  editor = "Mikhail J. Atallah",
  publisher = crcp,
  address = "Boca Raton, FL",
  year = 1998,
)

@INCOLLECTION( AA97,
  author = "A. Apostolico and M. J. Atallah",
  title = "Parallel computations of {Levenshtein} distances",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 5,
  pages = "143--184",
)

@ARTICLE( AALMF90,
  author = "A. Apostolico and M. J. Atallah and L. L. Larmore and S. McFaddin",
  title = "Efficient parallel algorithms for string editing and related problems",
  journal = sicomp,
  volume = 19,
  number = 5,
  year = 1990,
  pages = "968--988",
)

@INPROCEEDINGS( ABL99,
  author = "A. Apostolico and M. E. Bock and S. Lonardi",
  title = "Linear Global Detectors of Redundant and Rare Substrings",
  booktitle = proc#dcc,
  year = 1999,
  publisher = ieeecsp,
  address = "Snowbird, UT",
  editor = "J. A. Storer and M. Cohn",
  pages = "168--177",
)
 
@ARTICLE( ABLX2000,
  author = "A. Apostolico and M. E. Bock and S. Lonardi and X. Xu",
  title = "Efficient Detection of Unusual Words",
  journal = jcb,
  volume = 7,
  number = "1/2",
  year = 2000,
  pages = "71--94",
)

@INPROCEEDINGS( ABX97,
  author = "A. Apostolico and M. E. Bock and X. Xu",
  title = "Annotated Statistical Indices for Sequence Analysis",
  booktitle = "Sequences",
  editor = "B. Carpentieri and A. {De Santis} and U. Vaccaro and J. Storer",
  publisher = ieeecsp,
  address = "Positano, Italy",
  year = 1998,
  pages = "215--229",
)

@TECHREPORT( AB92b,
  author = "A. Apostolico and D. Breslauer",
  title = "An optimal {$O(\log n)$} time parallel algorithm for detecting all squares in a string",
  type = "Report",
  number = "CUCS-040-92",
  institution = "Computer Science Department, Columbia, University, New York NY",
  year = 1992,
)

@INPROCEEDINGS( AB92c,
  author = "A. Apostolico and D. Breslauer",
  title = "Optimal parallel algorithms for periods, palindromes and squares",
  booktitle = proct#"3rd "#swat,
  address = "Helsinki, Finland",
  editor = "O. Nurmi and E. Ukkonen",
  series = lncs,
  number = 621,
  publisher = svb,
  year = 1992,
  pages = "296--307",
)

@ARTICLE( AB96,
  author = "A. Apostolico and D. Breslauer",
  title = "An optimal {$O(\log \log N)$} time parallel algorithm for detecting all squares in a string",
  journal = sicomp,
  volume = 25,
  number = 6,
  year = 1996,
  pages = "1318--1331",
)

@INCOLLECTION( AB97,
  author = "A. Apostolico and D. Breslauer",
  title = "Of Periods, Quasiperiods, Repetitions and Covers",
  booktitle = "Structures in Logic and Computer Science, A Selection of Essays in honor of A. Ehrenfeucht", 
  editor = "J. Mycielski and G. Rozenberg and A. Salomaa",
  series = lncs,
  number = 1261,
  publisher = svb,
  year = 1997,
  pages = "236--248",
)

@INCOLLECTION( ABG92,
  author = "A. Apostolico and D. Breslauer and Z. Galil",
  title = "Optimal parallel algorithms for periods, palindromes and squares",
  booktitle = proct#"19th "#icalp,
  address = "Wien, Austria",
  publisher = svb,
  year = 1992,
  pages = "296--307",
)

@INPROCEEDINGS( ABG94,
  author = "A. Apostolico and D. Breslauer and Z. Galil",
  title = "Parallel detection of all palindromes in a string",
  booktitle = proct#"11th "#stacs,
  address = caen,
  editor = "P. Enjalbert and E. W. Mayr and K. W. Wagner",
  series = lncs,
  number = 775,
  publisher = svb,
  year = 1994,
  pages = "497--506",
)

@ARTICLE( ABG95,
  author = "A. Apostolico and D. Breslauer and Z. Galil",
  title = "Parallel detection of all palindromes in a string",
  journal = tcs,
  volume = 141,
  number = "1--2",
  year = 1995,
  pages = "163--173",
)

@ARTICLE( AB2000,
  author = "A. Apostolico and V. E. Brimkov",
  title = "Fibonacci arrays and their two-dimensional repetitions",
  journal = tcs,
  volume = 237,
  number = "1--2",
  year = 2000,
  pages = "263--273",
)

@ARTICLE( ABG92b,
  author = "A. Apostolico and S. Browne and C. Guerra",
  title = "Fast linear-space computations of longest common subsequences",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "3--17",
)

@TECHREPORT( AC89,
  author = "A. Apostolico and M. Crochemore",
  title = "Optimal canonization of all substrings of a string",
  type = "Rapport",
  number = "LITP 89.75",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1989,
)

@TECHREPORT( AC90,
  author = "A. Apostolico and M. Crochemore",
  title = "Fast parallel {Lyndon} factorization with applications",
  type = "Report",
  number = "CSD-TR-931",
  institution = "Purdue University",
  year = 1990,
)

@ARTICLE( AC91,
  author = "A. Apostolico and M. Crochemore",
  title = "Optimal canonization of all substrings of a string",
  journal = infcomp,
  volume = 95,
  number = 1,
  year = 1991,
  pages = "76--95",
)

@ARTICLE( AC95,
  author = "A. Apostolico and M. Crochemore",
  title = "Fast Parallel {Lyndon} Factorization with Applications",
  journal = matsysthe,
  volume = 28,
  number = 2,
  year = 1995,
  pages = "89--108",
)

@TECHREPORT( AE90,
  author = "A. Apostolico and A. Ehrenfeucht",
  title = "Efficient detection of quasiperiodicities in strings",
  type = "Report",
  number = "90.5",
  institution = "The Leonardo Fibonacci Institute, Trento, Italy",
  year = 1990,
)

@ARTICLE( AE93,
  author = "A. Apostolico and A. Ehrenfeucht",
  title = "Efficient detection of quasiperiodicities in strings",
  journal = tcs,
  volume = 119,
  number = 2,
  year = 1993,
  pages = "247--265",
)

@ARTICLE( AFI91,
  author = "A. Apostolico and M. Farach and C. S. Iliopoulos",
  title = "Optimal superprimitivity testing for strings",
  journal = ipl,
  volume = 39,
  number = 1,
  year = 1991,
  pages = "17--20",
)

@ARTICLE( AF87,
  author = "A. Apostolico and A. Fraenkel",
  title = "Robust Transmission of Unbounded Strings Using {F}ibonacci Representations",
  journal = ieeetit,
  volume = 33,
  number = 2,
  year = 1987,
  pages = "238--245",
)

@BOOK( AG85b,
  editor = "A. Apostolico and Z. Galil",
  title = "Combinatorial algorithms on words",
  collection = "NATO Advanced Science Institutes, serie F",
  volume = 12,
  publisher = svb,
  year = 1985,
)

@BOOK( AG97,
  editor = "A. Apostolico and Z. Galil",
  title = "Pattern matching algorithms",
  publisher = oxup,
  year = 1997,
)

@ARTICLE( AG84a,
  author = "A. Apostolico and R. Giancarlo",
  title = "Pattern matching implementation of a fast test for unique decipherability",
  journal = ipl,
  volume = 18,
  number = 3,
  year = 1984,
  pages = "155--158",
)

@ARTICLE( AG86,
  author = "A. Apostolico and R. Giancarlo",
  title = "The {Boyer-Moore-Galil} string searching strategies revisited",
  journal = sicomp,
  volume = 15,
  number = 1,
  year = 1986,
  pages = "98--105",
)

@ARTICLE( AG98,
  author = "A. Apostolico and R. Giancarlo",
  title = "Sequence alignment in molecular biology",
  journal = jcb,
  volume = 5,
  number = 2,
  year = 1998,
  pages = "173--196",
)

@INPROCEEDINGS( AG85c,
  author = "A. Apostolico and C. Guerra",
  title = "A fast linear-space algorithm for computing longest common subsequences",
  booktitle = proct#"23rd Allerton Conference",
  address = "Monticello",
  year = 1985,
  pages = "?--?",
)

@ARTICLE( AG87,
  author = "A. Apostolico and C. Guerra",
  title = "The longest common subsequence problem revisited",
  journal = algo,
  volume = 2,
  year = 1987,
  pages = "315--336",
)

@ARTICLE( AILSV88,
  author = "A. Apostolico and C. Iliopoulos and G. M. Landau and B. Schieber and U. Vishkin",
  title = "Parallel construction of a suffix tree with applications",
  journal = algo,
  volume = 3,
  year = 1988,
  pages = "347--365",
)

@INPROCEEDINGS( ALS97,
  author = "A. Apostolico and G. M. Landau and S. Skiena",
  title = "Matching for Run-Length Encoded Strings",
  booktitle = proc#"Complexity and Compression of SEQUENCES97",
  address = "Positano, Italy",
  year = 1997,
  pages = "137--146",
)

@ARTICLE( ALS99b,
  author = "A. Apostolico and G. M. Landau and S. Skiena",
  title = "Matching for Run-Length Encoded Strings",
  journal = jcompl,
  volume = 15,
  year = 1999,
  pages = "4--16",
)

@TECHREPORT( AL99,
  author = "A. Apostolico and S. Lonardi",
  title = "Compression of Biological Sequences by Greedy Off-Line Textual Substitution",
  institution = "Dept. of Computer Sciences, Purdue University",
  number = "TR-99-037",
  year = 1999,
)

@INPROCEEDINGS( AL2000,
  author = "A. Apostolico and S. Lonardi",
  title = "Compression of Biological Sequences by Greedy Off-Line Textual Substitution",
  booktitle = proc#dcc,
  publisher = ieeecsp,
  address = "Snowbird, UT",
  editor = "J. A. Storer and M. Cohn",
  year = 2000,
  pages = "143--152",
)
 
@ARTICLE( AL2000b,
  author = "A. Apostolico and S. Lonardi",
  title = "Off-Line Compression by Greedy Textual Substitution",
  journal = "?",
  year = 2000,
  volume = 88,
  number = 11,
  pages = "1733--1744",
)

@ARTICLE( AP83,
  author = "A. Apostolico and F. P. Preparata",
  title = "Optimal off-line detection of repetitions in a string",
  journal = tcs,
  volume = 22,
  number = 3,
  year = 1983,
  pages = "297--315",
)

@ARTICLE( AP85,
  author = "A. Apostolico and F. P. Preparata",
  title = "Structural properties of the string statistics problem",
  journal = jcss,
  volume = 31,
  number = 3,
  year = 1985,
  pages = "394--411",
)

@TECHREPORT( AP85b,
  author = "A. Apostolico and F. P. Preparata",
  title = "Data structures and algorithms for the string statistics problem",
  type = "Report",
  number = "CSD-TR-547",
  institution = "Purdue University",
  year = 1985,
)

@ARTICLE( AS92,
  author = "A. Apostolico and W. Szpankowski",
  title = "Self-alignment in words and their applications",
  journal = jalgo,
  volume = 13,
  number = 3,
  year = 1992,
  pages = "446--467",
)

@ARTICLE( AP88,
  author = "A. W. Appel and G. J. Jacobson",
  title = "The world's fastest scrabble program",
  journal = cacm,
  volume = 31,
  number = 5,
  year = 1988,
  pages = "572--%78",
)

@INPROCEEDINGS( ANZ97,
  author = "M.D. Ara{\'u}jo and G. Navarro and N. Ziviani",
  title = "Large Text Searching Allowing Errors",
  booktitle = proct#"4th "#wsp,
  address = "Valparaiso, Chile",
  editor = "R. Baeza-Yates",
  publisher = cup,
  year = 1997,
  pages = "2--20",
)

@INPROCEEDINGS( ACHP93,
  author = "J.-P. Arcangeli and M. Crochemore and J.-N. Hourcastagnou and J.-E. Pin",
  title = "Compression for an effective management of telemetry data",
  booktitle = proct#"2nd International Symposium on Ground Data Systems for Space Operations",
  type = "Rapport 93-5",
  publisher = "Jet Propulsion Laboratory Publications",
  year = 1993,
  pages = "823--830",
)

@INPROCEEDINGS( AFGV97,
  author = "L. Arge and P. Ferragina and R. Grossi and J.S. Vitter",
  title = "On Sorting Strings in External Memory (Extended Abstract)",
  booktitle = proct#"29th "#stoc,
  address = "El Paso, TX",
  c-organization = "ACM",
  year = 1997,
  pages = "540--548",
)

@ARTICLE( Arg87,
  author = "P. Argos",
  title = "A sensitive procedure to compare amino acid sequences",
  journal = jmolbiol,
  volume = 193,
  year = 1987,
  pages = "385--396",
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@ARTICLE( AV90,
  author = "P. Argos and M. Vingron",
  title = "Sensitivity comparison of protein amino acid sequences",
  journal = methenzy,
  volume = 188,
  year = 1990,
  pages = "352--365",
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@ARTICLE( AVV91,
  author = "P. Argos and M. Vingron and G. Vogt",
  title = "Protein sequence comparison: methods and significance",
  journal = "Protein Engineering",
  volume = 4,
  year = 1991,
  pages = "375--383",
)

@INPROCEEDINGS( ADLM96,
  author = "S. R. Arikati and A. Dessmark and A. Lingas and M. V. Marathe",
  title = "Approximation Algorithms for Maximum Two-Dimensional Pattern Matching",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "348--360",
)

@ARTICLE( ADLM2001,
  author = "S. R. Arikati and A. Dessmark and A. Lingas and M. V. Marathe",
  title = "Approximation Algorithms for Maximum Two-Dimensional Pattern Matching",
  journal = tcs,
  volume = 255,
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  year = 2001,
  pages = "51--62",
)

@ARTICLE( Ari81,
  author = "S. Arikawa",
  title = "One-way sequential search systems and their powers",
  journal = bmathstat,
  volume = 19,
  number = "3,4",
  year = 1981,
  pages = "69--83",
)

@ARTICLE( ASST82,
  author = "S. Arikawa and T. Shinohara and S. Shiraishi and Y. Tamakoshi",
  title = "An information system for researchers use",
  journal = binfcyb,
  volume = 20,
  number = "1,2",
  year = 1982,
  pages = "97--114",
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@ARTICLE( AS84,
  author = "S. Arikawa and T. Shinohara",
  title = "A run-time efficient realization of Aho-Corasick pattern matching machines",
  journal = ngcomp,
  volume = 2,
  year = 1984,
  pages = "171--186",
)

@ARTICLE( ASO92,
  author = "H. Arimura and T. Shinohara and S. Otsuki",
  title = "Polynomial time inference of unions of two tree pattern languages",
  journal = ieicetisd,
  volume = "E75",
  year = 1992,
  pages = "426--434",
)

@INPROCEEDINGS( ASO94,
  author = "H. Arimura and T. Shinohara and S. Otsuki",
  title = "Finding minimal generalizations for unions of pattern languages and its application to inductive inference fom positive data",
  booktitle = proct#"11th "#stacs,
  address = caen,
  editor = "P. Enjalbert and E. W. Mayr and K. W. Wagner",
  series = lncs,
  number = 775,
  publisher = svb,
  year = 1994,
  pages = "649--660",
)

@ARTICLE( ASA98,
  author = "T. Arita and M. Shishibori and J.-I. Aoe",
  title = "An efficient algorithm for full text retrieval for multiple keywords",
  journal = infsci,
  volume = 104,
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  year = 1998,
  pages = "345--363",
)

@INPROCEEDINGS( AS95,
  author = "C. Armen and C. Stein",
  title = "Improved length for the shortest superstring problem",
  booktitle = proct#"4th "#wads,
  address = "Kingston, Ontario, Canada",
  editor = "S. G. Akl and F. K. H. A. Dehne and J.-R. Sack and N. Santoro",
  series = lncs,
  number = 955,
  publisher = svb,
  year = 1995,
  pages = "494--505",
)

@ARTICLE( AS95b,
  author = "C. Armen and C. Stein",
  title = "Short superstrings and the structure of overlapping strings",
  journal = jcb,
  volume = 2,
  number = 2,
  year = 1996,
  pages = "307--332",
)

@INPROCEEDINGS( AS96,
  author = "C. Armen and C. Stein",
  title = "Algorithm for the Shortest Superstring Problem",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "87--101 ",
)

@ARTICLE( AS80,
  author = "D. B. Arnold and M. R. Sleep",
  title = "Uniform random generation of balanced parenthesis strings",
  journal = acmpls,
  volume = 2,
  year = 1980,
  pages = "122--128",
)

@ARTICLE( AGW86,
  author = "R. Arratia and L. Gordon and M. S. Waterman",
  title = "An extreme value theory for sequence matching",
  journal = astat,
  volume = 14,
  year = 1986,
  pages = "971--993",
)

@ARTICLE( AGW90,
  author = "R. Arratia and L. Gordon and M. S. Waterman",
  title = "The {Erd{\"o}s-R{\'e}nyi} law in distribution, for coin tossing and sequence matching",
  journal = astat,
  volume = 18,
  year = 1990,
  pages = "539--570",
)

@INPROCEEDINGS( AR96,
  author = "R. Arratia and G. Reinert",
  title = "Poisson Process Approximation for Repeats in One Sequence and Its Application to Sequencing by Hybridization",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "209--219",
)

@ARTICLE( AW85,
  author = "R. Arratia and M. S. Waterman",
  title = "Critical phenomena in sequence matching",
  journal = aprob,
  volume = 13,
  number = 4,
  year = 1985,
  pages = "1236--1249",
)

@ARTICLE( AW89,
  author = "R. Arratia and M. S. Waterman",
  title = "The {Erd{\"o}s-R{\'e}nyi} strong law for pattern matching with a given proportion of mismatches",
  journal = aprob,
  volume = 17,
  year = 1989,
  pages = "1152--1169",
)

@ARTICLE( AW94b,
  author = "R. Arratia and M. S. Waterman",
  title = "A phase transition for the score in matching random sequences allowing deletions",
  journal = aaprob,
  volume = 4,
  number = 1,
  year = 1994,
  pages = "200--225",
)

@ARTICLE( AE2000,
  author = "A. N. Arslan and O. Egecioglu",
  title = "Efficient Algorithms For Normalized Edit Distance",
  journal = jda,
  volume = 1,
  number = 1,
  year = 2000,
  pages = "3--20",
)

@INPROCEEDINGS( Arv97,
  author = "L. Arvestad",
  title = "Aligning coding {DNA} in the presence of frame-shift errors",
  booktitle = proct#"8th "#cpm,
  series = lncs,
  number = 1264,
  editor = "A. Apostolico and J. Hein",
  address = aarhus,
  publisher = svb,
  year = 1997,
  pages = "180--190",
)

@ARTICLE( Ash85,
  author = "I. Ashdown",
  title = "Parallel pattern matching and FGREP",
  journal = drdobbsj,
  volume = 10,
  number = 9,
  year = 1985,
  pages = "46--67",
)

@INPROCEEDINGS( AGS96,
  author = "M. J. Atallah and Y. G{\'e}nin and W. Szpankowski",
  title = "Pattern Matching Image Compression",
  booktitle = proct#"6th "#dcc,
  address = "Snowbird, UT",
  editor = "J. A. Storer and M. Cohn",
  publisher = ieeecsp,
  year = 1996,
  pages = "421",
)

@ARTICLE( AGS99,
  author = "M. J. Atallah and Y. G{\'e}nin and W. Szpankowski",
  title = "Structural Pattern Analysis",
  journal = ieeepami,
  volume = 21,
  number = 7,
  year = 1999,
  pages = "614--627",
)

@INPROCEEDINGS( AJS92,
  author = "M. J. Atallah and P. Jacquet and W. Szpankowski",
  title = "Pattern matching with mismatches: a probabilistic analysis and a randomized algorithm",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "27--40",
)

@ARTICLE( AJS93,
  author = "M. J. Atallah and P. Jacquet and W. Szpankowski",
  title = "A probabilistic approach to pattern matching with mismatches",
  journal = ranstralg,
  volume = 4,
  year = 1993,
  pages = "191--213",
)

@TECHREPORT( AKLMT89,
  author = "M. J. Atallah and S. R. Kosaraju and L. L. Larmore and G. L. Miller and S. H. Teng",
  title = "Constructing trees in parallel",
  type = "Report",
  number = "CSD-TR-883",
  institution = "Purdue University",
  year = 1989,
)

@BOOK( APS99,
  author = "T. K. Attwood and D. J. Parry-Smith",
  title = "Introduction to bioinformatics",
  publisher = "Addison Wesley Longman",
  year = 1999,
)

@ARTICLE( ACLQ95,
  author = "L. Audoire and J.-J. Codani and D. Lavenier and P. Quinton",
  title = "{Machines Sp\'ecialis\'ees pour la Comparaison de S\'equences Biologiques}",
  journal = tsi, 
  volume = 14, 
  number = 1, 
  year = 1995,
)

@ARTICLE( ABCP98,
  author = "B. Awerbuch and B. Berger and L. Cowen and D. Peleg ",
  title = "Near-Linear Time Construction of Sparse Neighborhood Covers ",
  journal = sicomp,
  volume = 28,
  number = 1,
  year = 1998,
  pages = "263--277",
)


% BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

@BOOK( Baa88,
  author = "S. Baase",
  title = "Computer algorithms -- Introduction to design and analysis",
  publisher = aw,
  address = read,
  year = 1988,
)

@INPROCEEDINGS( Bac2000,
  author = "R. Backofen",
  title = "An Upper Bound for Number of Contacts in the {HP}-Model on the {Face-Centered-Cubic Lattice (FCC)}",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "277--292",
)

@ARTICLE( BA86,
  author = "D. J. Bacon and W. F. Anderson",
  title = "Multiple sequence comparison",
  journal = jmolbiol,
  volume = 191,
  year = 1986,
  pages = "153--161",
)

@ARTICLE( BA90,
  author = "D. J. Bacon and W. F. Anderson",
  title = "Multiple sequence comparison",
  journal = methenzy,
  volume = 183,
  year = 1990,
  pages = "438--447",
)

@TECHREPORT( Bae87,
  author = "R. A. Baeza-Yates",
  title = "On the average case on string matching algorithms",
  type = "Report",
  number = "CS-87-66",
  institution = "Computer Science Department, University of Waterloo",
  year = 1987,
)

@TECHREPORT( Bae88,
  author = "R. A. Baeza-Yates",
  title = "The subsequence graph of a text",
  type = "Report",
  number = "CS-88-34",
  institution = "Computer Science Department, University of Waterloo",
  year = 1988,
)

@ARTICLE( Bae89,
  author = "R. A. Baeza-Yates",
  title = "Improved string searching",
  journal = spe,
  volume = 19,
  number = 3,
  year = 1989,
  pages = "257--271",
)

@PHDTHESIS( Bae89b,
  author = "R. A. Baeza-Yates",
  title = "Efficient text searching",
  type = "{Ph. D. Thesis}",
  school = "Department of Computer Science, University of Waterloo, Ontario",
  year = 1989,
)

@INPROCEEDINGS( Bae89c,
  author = "R. A. Baeza-Yates",
  title = "String searching algorithms revisited",
  booktitle = proct#"1st "#wads,
  address = "Ottawa, Canada",
  editor = "F. Dehne and J. R. Sack and N. Santoro",
  series = lncs,
  number = 382,
  publisher = svb,
  year = 1989,
  pages = "75--96",
)

@ARTICLE( Bae89d,
  author = "R. A. Baeza-Yates",
  title = "Algorithms for string searching: a survey",
  journal = sigirf,
  volume = 23,
  number = "3,4",
  year = 1989,
  pages = "34--58",
)

@INPROCEEDINGS( Bae89e,
  author = "R. A. Baeza-Yates",
  title = "The Subsequence Graph of a Text",
  booktitle = proct#"3rd "#tapsoft,
  address = "Barcelona, Spain",
  editor = "J. Diaz and F. Orejas",
  series = lncs,
  number = 351,
  publisher = svb,
  year = 1989,
  pages = "104--118",
)

@ARTICLE( Bae91,
  author = "R. A. Baeza-Yates",
  title = "Searching subsequences",
  journal = tcs,
  volume = 78,
  number = 2,
  year = 1991,
  pages = "363--376",
)

@INPROCEEDINGS( Bae92,
  author = "R. A. Baeza-Yates",
  title = "Text retrieval: theory and practice",
  booktitle = proct#"12th "#ifip,
  address = "Madrid, Spain",
  editor = "J. van Leeuwen",
  publisher = noho,
  year = 1992,
  pages = "465--476",
)

@ARTICLE( Bae92b,
  author = "R. A. Baeza-Yates",
  title = "Notes on a Very Fast Substring Search Algorithm",
  journal = cacm,
  volume = 35,
  number = 4,
  year = 1992,
  pages = 132,
)

@INPROCEEDINGS( Bae96,
  author = "R. A. Baeza-Yates",
  title = "A unified view to pattern-matching problems",
  booktitle = proc#"PANEL'96",
  address = "Bogot{\'a}, Colombia",
  year = 1996,
)
@INPROCEEDINGS( Bae96b,
  author = "R. A. Baeza-Yates",
  title = "A unified view of string matching algorithms",
  booktitle = proc#"SOFSEM'96: Theory and Practice of Informatics",
  number = 1175,
  series = lncs,
  publisher = svb,
  year = 1996,
  pages = "1--15",
)

@ARTICLE( BYBZ96,
  title = "Hierarchies of Indices for Text Searching",
  author = "R. A. Baeza-Yates and E. F. Barbosa and N. Ziviani",
  journal = infosys,
  year = 1996,
  volume = 21,
  number = 6,
  pages = "497--514",
)

@ARTICLE( BYCG94,
  author = "R.A. Baeza-Yates and C. Choffrut and G.H. Gonnet",
  title = "On {Boyer-Moore} automata",
  journal = algo,
  volume = 12,
  number = "4/5",
  year = 1994,
  pages = "268--292",
)

@INPROCEEDINGS( BYCMW94,
  author = "R. A. {Baeza-Yates} and W. Cunto and U. Manber and S. Wu",
  title = "Proximity Matching Using Fixed-Queries Trees",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  pages = "198--212",
  year = 1994,
)

@ARTICLE( BF96,
  author = "R.A. Baeza-Yates and L.O. Fuentes",
  title = "A framework to animate string algorithms",
  journal = ipl,
  volume = 59,
  number = 5,
  year = 1996,
  pages = "241--244",
)

@INPROCEEDINGS( BYGN96,
  author = "R. A. Baeza-Yates and R. Gavald{\`a} and G. Navarro",
  title = "Bounding the expected length of longest common subsequences and forests",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "1--15",
)

@ARTICLE( BGNR99,
  author = "R. A. Baeza-Yates and R. Gavald{\`a} and G. Navarro and R. Scheihing",
  title = "Bounding the expected length of longest common subsequences and forests",
  journal = thcosy,
  volume = 32,
  number = 4,
  year = 1999,
  pages = "435--452",
)

@TECHREPORT( BYG88,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "New algorithm for pattern matching with and without mismatches",
  type = "Report",
  number = "CS-88-37",
  institution = "Department of Computer Science, University of Waterloo",
  year = 1988,
)

@TECHREPORT( BYG89,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "{Boyer-Moore} automata",
  type = "Report",
  institution = "University of Waterloo",
  year = 1989,
)

@INPROCEEDINGS( BYG89b,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "A new approach to text searching",
  booktitle = proct#"12th "#sigir,
  address = camma,
  editor = "N. J. Belkin and C. J. van Rijsbergen",
  publisher = acmp,
  year = 1989,
  pages = "168--175",
)

@INPROCEEDINGS( BYG89c,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "Efficient text searching of regular expressions",
  booktitle = proct#"16th "#icalp,
  address = stressa,
  editor = "G. Ausiello and M. Dezani-Ciancaglini and Ronchi Della Rocca, S.",
  series = lncs,
  number = 372,
  publisher = svb,
  year = 1989,
  pages = "46--62",
)

@TECHREPORT( BYG90,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "All-against-all sequence matching",
  type = "Report",
  institution = "Department of Computer Science, Universidad de Chile",
  year = 1990,
)

@ARTICLE( BYG92,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "A new approach to text searching",
  journal = cacm,
  volume = 35,
  number = 10,
  year = 1992,
  pages = "74--82",
)

@ARTICLE( BYG94,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "Fast string matching with mismatches",
  journal = infcomp,
  volume = 108,
  number = 2,
  year = 1994,
  pages = "187--199",
)

@ARTICLE( BYG96,
  author = "R. A. Baeza-Yates and G. H. Gonnet",
  title = "Fast text searching for regular expressions or automaton searching on tries",
  journal = jacm,
  volume = 43,
  number = 6,
  year = 1996,
  pages = "915--936",
)

@INPROCEEDINGS( BYGR90,
  author = "R. A. Baeza-Yates and G. H. Gonnet and M. R{\'e}gnier",
  title = "Analysis of {Boyer-Moore} type string searching algorithms",
  booktitle = proct#"1st "#soda,
  address = frisco,
  year = 1990,
  pages = "328--343",
)

@INPROCEEDINGS( BYN96a,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "A faster algorithm for approximate string matching",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "1--23",
)

@INPROCEEDINGS( BYN96b,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "A fast heuristic for approximate string matching",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "47--63",
)

@INPROCEEDINGS( BYN97,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "Multiple Approximate String Matching",
  booktitle = proct#"5th "#wads,
  address = "Halifax, Nova Scotia, Canada",
  editor = "F. K. H. A. Dehne and A. Rau-Chaplin and J.-R. Sack and R. Tamassia",
  series = lncs,
  number = 1272,
  publisher = svb,
  year = 1997,
  pages = "174--184",
)

@INPROCEEDINGS( BYN97b,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "Block-addressing indices for approximate text retrieval",
  booktitle = proc#"ACM CIKM'97",
  year = 1997,
  pages = "1--8",
)

@INPROCEEDINGS( BYN98,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "Fast Two-Dimensional Approximate Pattern Matching",
  booktitle = proct#"3rd "#latin,
  address = "Campinas, Brazil",
  editor = "C. L. Lucchesi and A. V. Moura",
  series = lncs,
  number = 1380,
  publisher = svb,
  year = 1998,
  pages = "341--351",
)

@TECHREPORT( BYN98b,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "New and faster filters for multiple approximate string matching",
  institution = "Dept. of Computer Science, University of Chile",
  type = "Technical Report",
  number = "TR/DCC-98-10",
  year = 1998,
)

@ARTICLE( BYN99,
  author = "R. A. Baeza-Yates and G. Navarro",
  title = "Faster Approximate String Matching",
  journal = algo,
  volume = 23,
  number = 2,
  year = 1999,
  pages = "127--158",
)

@ARTICLE( BYN2000,
  author = "R. Baeza-Yates and G. Navarro",
  title = "New Models and Algorithms for Multidimensional Approximate Pattern Matching",
  journal = jda,
  volume = 1,
  number = 1,
  year = 2000,
  pages = "21--49",
)

@INPROCEEDINGS( BYP92,
  author = "R. A. Baeza-Yates and C. H. Perleberg",
  title = "Fast and practical approximate string matching",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "185--192",
)

@ARTICLE( BYP96,
  author = "R. A. Baeza-Yates and C. H. Perleberg",
  title = "Fast and practical approximate string matching",
  journal = ipl,
  volume = 59,
  number = 1,
  year = 1996,
  pages = "21--27",
)

@INPROCEEDINGS( BYR90,
  author = "R. A. Baeza-Yates and M. R{\'e}gnier",
  title = "Fast algorithms for two-dimensional and multiple pattern matching",
  booktitle = proct#"2nd "#swat,
  address = "Bergen, Norway",
  editor = "R. Karlsson and J. Gilbert",
  series = lncs,
  number = 447,
  publisher = svb,
  year = 1990,
  pages = "332--347",
)

@ARTICLE( BYR92,
  author = "R. A. Baeza-Yates and M. R{\'e}gnier",
  title = "Average running time of the {Boyer-Moore-Horspool} algorithm",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "19--31",
)

@ARTICLE( BYR93,
  author = "R. A. Baeza-Yates and M. R{\'e}gnier",
  title = "Fast two-dimensional pattern matching",
  journal = ipl,
  volume = 45,
  number = 1,
  year = 1993,
  pages = "51--57",
)

@BOOK( BYRN99,
  editor = "R. A. Baeza-Yates and B. Ribeiro-Neto",
  title = "Modern Information Retrieval",
  publisher = aw,
  year = 1999,
)

@INPROCEEDINGS( BYS95,
  author = "R. A. Baeza-Yates and R. Scheihing",
  title = "New lower bounds for the expected length of longest common subsequences and forests",
  booktitle = proct#"15th International Conference of the Chilean Computer Science Society",
  address = "Arica, Chile",
  year = 1995,
  pages = "48--58",
)

@INPROCEEDINGS( BLP94,
  author = "V. Bafna and E. L. Lawler and P. A. Pevzner",
  title = "Approximation Algorithms for Multiple Sequence Aligmnent",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "43--53",
)

@ARTICLE( BLP97,
  author = "V. Bafna and E. L. Lawler and P. A. Pevzner",
  title = "Approximation Algorithms for Multiple Sequence Aligmnent",
  journal = tcs,
  volume = 182,
  number = "1--2",
  year = 1997,
  pages = "233--244",
)

@INPROCEEDINGS( BMR95,
  author = "V. Bafna and S. Muthukrishnan and R. Ravi",
  title = "Computing similarity between {RNA} strings",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "1--16",
)

@INPROCEEDINGS( BP93,
  author = "V. Bafna and P. A. Pevzner",
  title = "Genome Rearrangements and Sorting by Reversals",
  booktitle = "Proceedings of the 34th Annual Symposium on Foundations of Comptuer Science",
  address = "Palo Alto, CA",
  publisher = ieeecsp,
  year = 1993,
  pages = "148--157",
)

@ARTICLE( BP96,
  author = "V. Bafna and P. Pevzner",
  title = "Genome rearrangments and sorting by reversal",
  journal = sicomp,
  volume = 25,
  number = 2,
  year = 1996,
  pages = "272--289",
)

@ARTICLE( BP98,
  author = "V. Bafna and P. A. Pevzner",
  title = "Sorting by Transpositions",
  journal = sidm,
  volume = 11,
  number = 2,
  year = 1998,
  pages = "224--240",
)

@ARTICLE( BD80,
  author = "T. A. Bailey and R. G. Dromey",
  title = "Fast string searching by finding subkeys in subtext",
  journal = ipl,
  volume = 11,
  number = 3,
  year = 1980,
  pages = "130--133",
)

@ARTICLE( Bai86,
  author = "W. Bains",
  title = "{MULTAN}: a program to align multiple {DNA} sequences",
  journal = nucacires,
  volume = 14,
  year = 1986,
  pages = "159--177",
)

@ARTICLE( Bai89,
  author = "W. Bains",
  title = "{MULTAN} (2), A multiple string alignment program for nucleic acids and proteins",
  journal = cabios,
  volume = 5,
  year = 1989,
  pages = "51--52",
)

@INPROCEEDINGS( Bak92,
  author = "B. S. Baker",
  title = "A program for identifying duplicated code",
  booktitle = proct#"24th Symposium on the Interface: Computer Science and Statistics",
  address = "College Station, TX",
  publisher = acmp,
  year = 1992,
  pages = "18--21",
)

@INPROCEEDINGS( Bak93,
  author = "B. S. Baker",
  title = "A theory of parameterized pattern matching: algorithms and applications",
  booktitle = proct#"25th "#stoc,
  address = "San Diego, CA",
  publisher = acmp,
  year = 1993,
  pages = "71--80",
)

@INPROCEEDINGS( Bak95,
  author = "B. S. Baker",
  title = "Parameterized pattern matching by {Boyer-Moore-type} algorithms",
  booktitle = proct#"6th "#soda,
  address = frisco,
  year = 1995,
  pages = "541--550",
)

@ARTICLE( Bak96,
  author = "B. S. Baker",
  title = "Parameterized pattern matching: algorithms and applications",
  journal = jcss,
  volume = 52,
  number = 1,
  pages = "28--42",
  year = 1996,
)

@ARTICLE( Bak97,
  author = "B. S. Baker",
  title = "Parameterized duplication in strings: algorithms and an application to software maintenance",
  journal = sicomp,
  volume = 26,
  number = 5,
  year = 1997,
  pages = "1343--1362",
)

@INPROCEEDINGS( BR98,
  author = "B. S. Baker and R. Giancarlo",
  title = "Longest Common Subsequence from Fragments via Sparse Dynamic Programming",
  booktitle = proct#"6th "#esa,
  address = "Venice, Italy",
  editor = "G. Bilardi and G. F. Italiano and A. Pietracaprina and G. Pu cci",
  series = lncs,
  number = 1461,
  publisher = svb,
  year = 1998,
  pages = "79--90",
)

@ARTICLE( BMNT89,
  author = "K. A. Baker and G. F. McNulty and W. Taylor",
  title = "Growth problems for avoidable words",
  journal = tcs,
  volume = 69,
  number = 3,
  year = 1989,
  pages = "319--345",
)

@ARTICLE( Bak78,
  author = "T. P. Baker",
  title = "A technique for extending rapid exact-match string matching to arrays of more than one dimension",
  journal = sicomp,
  volume = 7,
  number = 4,
  year = 1978,
  pages = "533--541",
)

@INPROCEEDINGS( Bal98,
  author = "M. Bal{\' \i}k",
  title = "Implementation of {DAWG}",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "26--35",
)

@INPROCEEDINGS( Bal2000,
  author = "M. Bal{\' \i}k",
  title = "Condensation principle",
  booktitle = proct#pscw#"~'2000, Bratislava, Slovakia",
  address = ctu,
  editor = "M. Bal{\'i}k and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--2000--03",
  year = 2000,
  pages = "13--23",
)

@ARTICLE( BM90,
  author = "A. M. Barber and Maizel, Jr, J. V.",
  title = "{SequenceEditingAligner}: a multiple sequence editor and aligner",
  journal = gata,
  volume = 7,
  year = 1990,
  pages = "39--45",
)

@ARTICLE( Bar90,
  author = "M. P. Barnett",
  title = "Primitive String Transformations as Reductions to Normal Form",
  journal = sigplann,
  volume = 25,
  number = 5,
  pages = "29--33",
  year = 1990,
)

@ARTICLE( Bar81,
  author = "G. Barth",
  title = "An alternative for the implementation of {Knuth-Morris-Pratt} algorithm",
  journal = ipl,
  volume = 13,
  number = "4/5",
  year = 1981,
  pages = "134--137",
)

@ARTICLE( Bar84,
  author = "G. Barth",
  title = "An analytical comparison of two string searching algorithms",
  journal = ipl,
  volume = 18,
  number = 5,
  year = 1984,
  pages = "249--256",
)

@INCOLLECTION( Bar85,
  author = "G. Barth",
  title = "Relating the average-case cost of the brute-force and the {Knuth-Morris-Pratt} string matching algorithm",
  booktitle = "Combinatorial Algorithms on Words",
  editor = "A. Apostolico and Z. Galil",
  series = "NATO Advanced Science Institutes, Series F",
  publisher = svb,
  volume = 12,
  year = 1985,
  pages = "45--58",
)

@ARTICLE( Bar90b,
  author = "G. J. Barton",
  title = "Protein multiple sequence alignment and flexible pattern matching",
  journal = methenzy,
  volume = 188,
  year = 1990,
  pages = "403--428",
)

@ARTICLE( Bar93,
  author = "G. J. Barton",
  title = "An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps",
  journal = cabios,
  volume = 9,
  number = 6,
  year = 1993,
  pages = "729--734",
)

@ARTICLE( BS87,
  author = "G. J. Barton and M. J. E. Sternberg",
  title = "A strategy for the rapid multiple alignment of protein sequences",
  journal = jmolbiol,
  volume = 198,
  year = 1987,
  pages = "327--337",
)

@INPROCEEDINGS( BI99,
  author = "S. Batzoglou and S. Istrail",
  title = "Physical Mapping With Repeated Probes: The Hypergraph Superstring Problem",
  booktitle = proct#"10th "#cpm,
  address = warwick,
  editor = "M. Crochemore and M. Paterson",
  series = lncs,
  number = 1645,
  publisher = svb,
  year = 1999,
  pages = "66--77",
)

@ARTICLE( BI2000,
  author = "S. Batzoglou and S. Istrail",
  title = "Physical Mapping With Repeated Probes: The Hypergraph Superstring Problem",
  journal = jda,
  volume = 1,
  number = 1,
  year = 2000,
  pages = "51--76",
)

@ARTICLE( BEMN79,
  author = "D. R. Bean and A. Ehrenfeucht and G. F. McNulty",
  title = "Avoidable patterns in strings of symbols",
  journal = pjmath,
  volume = 85,
  year = 1979,
  pages = "261--294",
)

@BOOK( BBC92,
  author = "D. Beauquier and J. Berstel and P. Chr{\'e}tienne",
  title = "{\'E}l{\'e}ments d'algorithmique",
  publisher = "Masson",
  address = "Paris, France",
  year = 1992,
)

@INPROCEEDINGS( BP89,
  author = "D. Beauquier and J.-E. Pin",
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@INPROCEEDINGS( BY99,
  author = "G. Bejerano and G. Yona",
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@BOOK( Bel57,
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@INPROCEEDINGS( BABIP94,
  author = "A. {Ben-Amram} and O. Berkman and C. S. Iliopoulos and K. Park",
  title = "The Subtree Max Gap Problem with Application to Parallel String Covering",
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@INPROCEEDINGS( BDLPR97,
  author = "A. {Ben-Dor} and G. Lancia and J. Perone and R. Ravi",
  title = "Banishing bias from consensus sequences",
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@INPROCEEDINGS( BDPSS99,
  author = "A. {Ben-Dor} and I. Pe'er and R. Shamir and R. Sharan",
  title = "On the Complexity of Positional Sequencing by Hybridization",
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@INPROCEEDINGS( BKW95,
  author = "C. Benham and S. Kannan and T. Warnow",
  title = "Of chicken teeth and mouse eyes, or generalized character compatibility",
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@PHDTHESIS( Ben92,
  author = "G. E. Benson",
  title = "Two-dimensional periodicity and matching algorithms",
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  year = 1992,
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@INPROCEEDINGS( Ben94,
  author = "G. Benson",
  title = "A space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score",
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  year = 1994,
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@INPROCEEDINGS( Ben97,
  author = "G. Benson",
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@INPROCEEDINGS( Ben98,
  author = "G. Benson",
  title = "An Algorithm for Finding Tandem Repeats of Unspecified Pattern Size",
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  publisher = acmp,
  year = 1998,
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@ARTICLE( BW94,
  author = "G. Benson and M. S. Waterman",
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@INPROCEEDINGS( BM99,
  author = "J. Bentley and D. McIlroy",
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@INPROCEEDINGS( BS97b,
  author = "J. L. Bentley and R. Sedgewick",
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  year = 1997,
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@INPROCEEDINGS( BYP89,
  author = "S. Ben-Yehuda and R. Y. Pinter",
  title = "Symbolic layout improvement using string matching based local transformation",
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  year = 1989,
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@INPROCEEDINGS( BHR98,
  author = "L. Bergroth and H. Hakonen and T. Raita",
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  address = "Santa Cruz de la Sierra BoliviaSanta Cruz de la Sierra, Bolivia",
  year = 1998,
  pages = "32--40",
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@INPROCEEDINGS( BBGSV89,
  author = "O. Berkman and D. Breslauer and Z. Galil and B. Schieber and U. Vishkin",
  title = "Highly parallelizable problems",
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  year = 1989,
  pages = "309--319",
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@ARTICLE( BIP95,
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@INPROCEEDINGS( BH85,
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  year = 1985,
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@INPROCEEDINGS( BH96,
  author = "P. Berman and S. Hannenhalli",
  title = "Fast Sorting by Reversal",
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@INPROCEEDINGS( BKLPR97,
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@INPROCEEDINGS( BZWKM99,
  author = "P. Berman and Z. Zhang and Y. I. Wolf and E. V. Koonin and W. Miller",
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@ARTICLE( BS86,
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@INPROCEEDINGS( BR99b,
  author = "T. Berry and S. Ravindran",
  title = "String matching in a compressed {DNA} text",
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@TECHREPORT( Ber78,
  author = "J. Berstel",
  title = "Mots sans carr{\'e}s et morphismes it{\'e}r{\'e}s",
  type = "Rapport",
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  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1978,
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@TECHREPORT( Ber84,
  author = "J. Berstel",
  title = "Some recent results on squarefree words",
  type = "Rapport",
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  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1984,
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@ARTICLE( BB99,
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@TECHREPORT( BPPR78,
  author = "J. Berstel and D. Perrin and J.-F. Perrot and A. Restivo",
  title = "Sur le th{\'e}or{\`e}me du d{\'e}faut",
  type = "Rapport",
  number = "LITP 78-17",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1978,
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@ARTICLE( BPPR79,
  author = "J. Berstel and D. Perrin and J.-F. Perrot and A. Restivo",
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@TECHREPORT( BP92,
  author = "J. Berstel and M. Pocchiola",
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@ARTICLE( BP93b,
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@ARTICLE( BP94,
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@INPROCEEDINGS( BS93,
  author = "J. Berstel and P. S{\'e}{\'e}bold",
  title = "A characterization of {Sturmian} morphisms",
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@ARTICLE( BS94,
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@TECHREPORT( BLLP87,
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  title = "String matching with context dependent errors",
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  year = 1987,
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@INPROCEEDINGS( BLFL90,
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  title = "Context--dependent string matching",
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  year = 1990,
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@ARTICLE( BLLP90,
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@ARTICLE( BLPL92,
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@ARTICLE( Bic87,
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@PHDTHESIS( Bie95,
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  title = "Genetic sequence data retrieval and manipulation based on generalized suffix trees",
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@ARTICLE( BGJ89,
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@INCOLLECTION( BFT87,
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  year = 1987,
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@BOOK( BR87,
  author = "M. J. Bishop and C. J. Rawlings",
  title = "Nucleic acid and protein sequence analysis: a practical approach",
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  year = 1987,
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@ARTICLE( BT84,
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@ARTICLE( BT86,
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@ARTICLE( Bla86,
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@PHDTHESIS( Blo89,
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  title = "Experimental evaluation and optimization of Aho-Corasick pattern matching machine",
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@INPROCEEDINGS( Blo96,
  author = "M. Bloch",
  title = "Efficiency of {AC}-machine and {SFNA} in practical string matching",
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  author = "N. Blum",
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@ARTICLE( Blu2000,
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@INPROCEEDINGS( BJLTY91,
  author = "A. Blum and T. Jiang and M. Li and J. Tromp and M. Yannakakis",
  title = "Linear approximation of shortest superstrings",
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  year = 1991,
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@ARTICLE( BJLTY94,
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@ARTICLE( Blu87,
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@TECHREPORT( BB86,
  author = "J. Blumer and A. Blumer",
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  year = 1986,
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@ARTICLE( BBEHCS85,
  author = "A. Blumer and J. Blumer and A. Ehrenfeucht and D. Haussler and M. T. Chen and J. Seiferas",
  title = "The smallest automaton recognizing the subwords of a text",
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@ARTICLE( BBEHMC83,
  author = "A. Blumer and J. Blumer and A. Ehrenfeucht and D. Haussler and R. McConnel",
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@INPROCEEDINGS( BBEHMC84,
  author = "A. Blumer and J. Blumer and A. Ehrenfeucht and D. Haussler and R. McConnel",
  title = "Building a complete inverted file for a set of text files in linear time",
  booktitle = proct#"16th "#stoc,
  address = "Washington, D.C.",
  publisher = acmp,
  year = 1984,
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@INPROCEEDINGS( BBEHMC84b,
  author = "A. Blumer and J. Blumer and A. Ehrenfeucht and D. Haussler and R. McConnel",
  title = "Building the minimal {DFA} for the set of all subwords of a word on-line in linear time",
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@ARTICLE( BBEHMC87,
  author = "A. Blumer and J. Blumer and A. Ehrenfeucht and D. Haussler and R. McConnel",
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@ARTICLE( BEH89,
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@INPROCEEDINGS( BCGM99,
  author = "L. Boasson and P. Cegielski and I. Guessarian and Y. Matiyasevich",
  title = "Window-Accumulated Subsequence Matching Problem is Linear",
  booktitle = proct#"18th ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems",
  address = "Philadelphia, Pennsylvania",
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  year = 1999,
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@INPROCEEDINGS( BDFW94,
  author = "H. Bodlaender and R.G. Downey and M.R. Fellows and H.T. Wareham",
  title = "The Parametrized Complexity of Sequence Alignment and Consensus",
  booktitle = proct#"5th "#cpm,
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@ARTICLE( BDFHW95a,
  author = "H. Bodlaender and R. G. Downey and M. R. Fellows and M. T. Hallett and H. T. Wareham",
  title = "Parametrized Complexity Analysis in Computational Biology",
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  year = 1995,
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@ARTICLE( BDFHW95b,
  author = "H. Bodlaender and R. G. Downey and M. R. Fellows and M. T. Hallett and H. T. Wareham",
  title = "Parametrized Complexity Analysis in Computational Biology",
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@INPROCEEDINGS( BFE96,
  author = "H. L. Bodlaender and M. R. Fellows and P. A. Evans",
  title = "Finite-State Computability of Annotations of Strings and Trees",
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  year = 1996,
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@TECHREPORT( BDM94,
  author = "P. Bonizzoni and M. Duella and G. Mauri",
  title = "Approximation complexity of longest common subsequence and shortest common supersequence over fixed alphabet",
  type = "Report",
  number = "117/94",
  institution = "Universit{\`a} degli Studi Milano, Italy",
  year = 1994,
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@INPROCEEDINGS( BDVM2000,
  author = "P. Bonizzoni and G. Della Vedova and G. Mauri",
  title = "Approximating the Maximum Isomorphic Agreement Subtree Is Hard",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
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@ARTICLE( Boo73,
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@TECHREPORT( BL93,
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  title = "Faster Parallel Computation of Edit Distances",
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@ARTICLE( BJ91,
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  author = "A. Br{\={a}}zma",
  title = "Learning of regular expressions by pattern matching",
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@INBOOK( Bra97,
  author = "A. Br{\=a}zma",
  title = "Efficient learning of regular expressions from approximate examples",
  booktitle = "Computational Learning Theory and Natural Learning Systems",
  volume = "IV: Making Learning Systems Practical",
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  chapter = 19,
  year = 1997,
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@INPROCEEDINGS( BJUV96,
  author = "A. Br{\={a}}zma and I. Jonassen and E. Ukkonen and J. Vilo",
  title = "Discovering Patterns and Subfamilies in Biosequences",
  editor = "D. J. States and P. Agarwal and T. Gaasterland and L. Hunter and R. Smith",
  booktitle = proct#"4th "#ismb,
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  year = "1996",
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@ARTICLE( BJUV98,
  author = "A. Br{\={a}}zma and I. Jonassen and E. Ukkonen and J. Vilo",
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@INPROCEEDINGS( BJUV98b,
  author = "A. Br{\={a}}zma and I. Jonassen and J. Vilo and E. Ukkonen",
  title = "Pattern Discovery in Biosequences",
  series = lncs,
  editor = "Vasant Honavar and Giora Slutzki",
  booktitle = proct#"4th International Colloquium on Grammatical Inference ({ICGI}-98)",
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  publisher = svb,
  year = 1998,
  pages = "257--270",
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@ARTICLE( BJEG98,
  author = "A. Br{\={a}}zma and I. Jonassen and I. Eidhammer and D. Gilbert",
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@INPROCEEDINGS( BVEV97,
  author = "A. Br{\={a}}zma and J. Vilo and E. Ukkonen and K. Valtonen",
  title = "Data Mining for Regulatory Elements in Yeast Genome",
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  editor = "T. Gaasterland and P. Karp and K. Karplus and C. Ouzounis and C. Sander and A. Valencia",
  booktitle = proct#"5th "#ismb,
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  year = 1997,
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@INPROCEEDINGS( BGL2000,
  author = "E. Breimer and M. Goldberg and D. Lim",
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  year = 2000,
  pages = "147--156",
)

@TECHREPORT( Bre89,
  author = "D. Breslauer",
  title = "An Optimal {$O(\log \log n)$} Time Parallel String Matching Algorithm",
  institution = "Computer Science Department, Columbia University, NY",
  type = "Report",
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  year = 1989,
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@ARTICLE( Bre92,
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  year = 1992,
  pages = "345--347",
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@TECHREPORT( Bre92b,
  author = "D. Breslauer",
  title = "Fast parallel string prefix-matching",
  type = "Report",
  number = "CUCS-041-92",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1992,
)

@PHDTHESIS( Bre92c,
  author = "D. Breslauer",
  title = "Efficient string algorithmics",
  type = "{Ph. D. Thesis}",
  school = "Computer Science Department, Columbia University, NY",
  year = 1992,
)

@TECHREPORT( Bre92d,
  author = "D. Breslauer",
  title = "Testing String Superprimitivity in Parallel",
  type = "Report",
  number = "CUCS-053-92",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1992,
)

@INPROCEEDINGS( Bre93,
  author = "D. Breslauer",
  title = "Saving Comparisons in the {Crochemore-Perrin} String Matching Algorithm",
  booktitle = proct#"1st "#esa,
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  editor = "T. Lengauer",
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  publisher = svb,
  year = 1993,
  pages = "61--72",
)

@ARTICLE( Bre94,
  author = "D. Breslauer",
  title = "Testing string superprimitivity in parallel",
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  volume = 49,
  number = 5,
  year = 1994,
  pages = "235--241",
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@INPROCEEDINGS( Bre94b,
  author = "D. Breslauer",
  title = "Dictionary matching on unbounded alphabets: uniform length dictionaries",
  booktitle = proct#"5th "#cpm,
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  editor = "M. Crochemore and D. Gusfield",
  series = lncs,
  number = 807,
  publisher = svb,
  year = 1994,
  pages = "184--197",
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@ARTICLE( Bre95,
  author = "D. Breslauer",
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  number = 2,
  year = 1995,
  pages = "269--278",
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@ARTICLE( Bre95b,
  author = "D. Breslauer",
  title = "Dictionary matching on unbounded alphabets: uniform length dictionaries",
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  volume = 18,
  number = 2,
  year = 1995,
  pages = "278--295",
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@INPROCEEDINGS( Bre96,
  author = "D. Breslauer",
  title = "The suffix Tree of a Tree and Minimizing Sequential Transducers",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "116--129",
)

@ARTICLE( Bre96b,
  author = "D. Breslauer",
  title = "Saving comparisons in the {Crochemore--Perrin} string-matching algorithm",
  journal = tcs,
  volume = 158,
  number = "1--2",
  year = 1996,
  pages = "177--192",
)

@ARTICLE( Bre98,
  author = "D. Breslauer",
  title = "The suffix tree of a tree and minimizing sequential transducers",
  journal = tcs,
  volume = 191,
  number = "1--2",
  year = 1998,
  pages = "131--144",
)

@ARTICLE( BCT93,
  author = "D. Breslauer and L. Colussi and L. Toniolo",
  title = "Tight comparison bounds for the string prefix-matching problem",
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  volume = 47,
  number = 1,
  year = 1993,
  pages = "51--57",
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@INPROCEEDINGS( BCT93b,
  author = "D. Breslauer and L. Colussi and L. Toniolo",
  title = "Tight Comparison Bounds for the String Prefix-Matching Problem",
  booktitle = proct#"4th "#cpm,
  address = padova,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  number = 684,
  series = lncs,
  publisher = svb,
  year = 1993,
  pages = "11--19",
)

@ARTICLE( BCT98,
  author = "D. Breslauer and L. Colussi and L. Toniolo",
  title = "On the comparison complexity of the string prefix-matching problem",
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  volume = 29,
  number = 1,
  year = 1998,
  pages = "18--67",
)

@ARTICLE( BG90,
  author = "D. Breslauer and Z. Galil",
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  year = 1990,
  pages = "1051--1058",
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@INPROCEEDINGS( BG91,
  author = "D. Breslauer and Z. Galil",
  title = "A lower bound for parallel string matching",
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  address = "New Orleans, LA",
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  year = 1991,
  pages = "439--443",
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@ARTICLE( BG92,
  author = "D. Breslauer and Z. Galil",
  title = "A lower bound for parallel string matching",
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  volume = 21,
  number = 5,
  year = 1992,
  pages = "856--862",
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@TECHREPORT( BG92b,
  author = "D. Breslauer and Z. Galil",
  title = "Finding all periods and initial palindromes of a string in parallel",
  type = "Report",
  number = "CUCS-017-92",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1992,
)

@TECHREPORT( BG92c,
  author = "D. Breslauer and Z. Galil",
  title = "Parallel string matching algorithms",
  type = "Report",
  number = "CUCS-002-92",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1992,
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@TECHREPORT( BG92d,
  author = "D. Breslauer and Z. Galil",
  title = "Efficient Comparison Based String Matching",
  type = "Report",
  number = "CUCS-054-92",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1992,
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@ARTICLE( BG93,
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  title = "Efficient comparison based string matching",
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  year = 1993,
  pages = "339--365",
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@ARTICLE( BG95,
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  title = "Finding all periods and initial palindromes of a string in parallel",
  journal = algo,
  volume = 14,
  number = 4,
  year = 1995,
  pages = "355--366",
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@INPROCEEDINGS( BG95b,
  author = "D. Breslauer and L. G{\c a}sieniec",
  title = "Efficient string matching on coded texts",
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  editor = "Z. Galil and E. Ukkonen",
  address = espoo,
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  publisher = svb,
  year = 1995,
  pages = "27--40",
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@ARTICLE( BG95c,
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@ARTICLE( BH96b,
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@ARTICLE( BJJ97,
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@INPROCEEDINGS( BG96,
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@INPROCEEDINGS( BLPS99,
  author = "G. S. Brodal and R. B. Lyngs{\o} and C. N. S. Pedersen and J. Stoye",
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  year = 1999,
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@ARTICLE( BLPS2000,
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@ARTICLE( BV2000,
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@ARTICLE( BDMR90,
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@PHDTHESIS( Bru91,
  author = "V. Bruy{\`e}re",
  title = "Automates de {Boyer-Moore}",
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  year = 1991,
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@INPROCEEDINGS( BBYDS96,
  author = "V. Bruy{\`e}re and R. A. Baeza-Yates and O. Delgrange and R. Scheihing",
  title = "About the size of {Boyer-Moore} automata",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "31--46",
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@TECHREPORT( BD94,
  author = "V. Bruy{\`e}re and O. Delgrange",
  title = "About the size of the {Boyer-Moore} automaton",
  type = "Report",
  institution = "Universit{\'e} de Mons-Hainaut, Belgique",
  year = 1994,
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@ARTICLE( BP99,
  author = "V. Bruy{\`e}re and D. Perrin",
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  author = "D. Bryant",
  title = "A Lower Bound for the Breakpoint Phylogeny Problem",
  booktitle = proct#"11th "#cpm,
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  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "235--247",
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@INPROCEEDINGS( BG2000,
  author = "A. L. Buchsbaum and R. Giancarlo",
  title = "Algorithmic Aspects of Speech Recognition: A Synopsis",
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  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "27--32",
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@INPROCEEDINGS( BH99,
  author = "R. Bundschuh and T. Hwa",
  title = "An Analytic Study of the Phase Transition Line in Local Sequence Alignment with Gaps",
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  editor = "S. Istrail and P. Pevzner and M. Waterman",
  publisher = acmp,
  year = 1999,
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@ARTICLE( BB93,
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@ARTICLE( BC93,
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@ARTICLE( BC95,
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@INPROCEEDINGS( Bur88,
  author = "J. Burghardt",
  title = "A tree pattern matching algorithm with reasonable space requirements",
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@INPROCEEDINGS( BCFLRV99,
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  address = lyon,
  editor = "S. Istrail and P. Pevzner and M. Waterman",
  publisher = acmp,
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@ARTICLE( Bur82,
  author = "F. J. Burkowski",
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%CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC 

@ARTICLE( Cac92,
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@ARTICLE( CPT92,
  author = "J. Cai and R. Paige and R. Tarjan",
  title = "More efficient bottom-up multi-pattern matching in trees",
  journal = tcs,
  volume = 106,
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@TECHREPORT( CPT92b,
  author = "J. Cai and R. Paige and R. Tarjan",
  title = "More efficient bottom-up multi-pattern matching in trees",
  type = "Report",
  number = 604,
  institution = "Courant Institut, New York University, NY",
  year = 1992,
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@ARTICLE( CPT92c,
  author = "J. Cai and R. Paige and R. Tarjan",
  title = "More efficient bottom-up multi-pattern matching in trees",
  journal = tcs,
  volume = 106,
  number = 1,
  year = 1992,
  pages = "21--60",
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@ARTICLE( Cal2000,
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@INPROCEEDINGS( Can98,
  author = "C. R. Cantor",
  title = "Enhancements in Sequence Analysis with {DNA} Arrays",
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@INPROCEEDINGS( CCIMP99,
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@BOOK( CDSV93,
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@BOOK( CC96,
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@INPROCEEDINGS( Cap99,
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@ARTICLE( Cap99n,
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@INPROCEEDINGS( CLS2000,
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  year = 1994,
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@TECHREPORT( Cas94n,
  author = "J. Cassaigne",
  title = "Motifs {\'e}vitables et r{\'e}gularit{\'e} dans les mots",
  type = "Rapport",
  number = "LITP 94-04",
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  year = 1994,
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@ARTICLE( Cas99,
  author = "J. Cassaigne",
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@ARTICLE( CMR99,
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@ARTICLE( CRSSM2000,
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@ARTICLE( CV78,
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@ARTICLE( CR87,
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@ARTICLE( CWC92,
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@ARTICLE( Cha93,
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@PHDTHESIS( Cha91,
  author = "W. I. Chang",
  title = "Approximate pattern matching and biological applications",
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@INPROCEEDINGS( CL92,
  author = "W. I. Chang and J. Lampe",
  title = "Theoretical and empirical comparisons of approximate string matching algorithms",
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  publisher = svb,
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@INPROCEEDINGS( CL90,
  author = "W. I. Chang and E. L. Lawler",
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@ARTICLE( CL94,
  author = "W. I. Chang and E. L. Lawler",
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@INPROCEEDINGS( CM94,
  author = "W.I. Chang and T. Marr",
  title = "Approximate String Matching with Local Similarity",
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@INPROCEEDINGS( CP92,
  author = "C.-H. Chang and R. Paige",
  title = "From regular expression to {DFA}'s using {NFA}'s",
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  publisher = svb,
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@INPROCEEDINGS( Cha94,
  author = "K-M. Chao",
  title = "Computing All Suboptimal Alignments in Linear Space",
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@ARTICLE( CHM93,
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@ARTICLE( CM95,
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@ARTICLE( CZOM95,
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@INPROCEEDINGS( CP91a,
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@MISC( CL96e,
  author = "C. Charras and T. Lecroq",
  title = "Exact string matching algorithms",
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@TECHREPORT( CL97b,
  author = "C. Charras and T. Lecroq",
  title = "Exact string matching animation in Java",
  type = "Rapport",
  number = "LIR 97.10",
  institution = "Universit{\'e} de Rouen, France",
  year = 1997,
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@MISC( CL98a,
  author = "C. Charras and T. Lecroq",
  title = "Sequence comparison",
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  year = 1998,
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@INPROCEEDINGS( CL98b,
  author = "C. Charras and T. Lecroq",
  title = "Exact string matching animation in Java",
  booktitle = proct#pscw#"~'98",
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  address = ctu,
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "36--43",
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@INPROCEEDINGS( CL99,
  author = "C. Charras and T. Lecroq",
  title = "Java tools to help understanding pattern matching techniques",
  booktitle = proct#"5th International Conference on Compute Aided Engineering Education",
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@INPROCEEDINGS( CLP98,
  author = "C. Charras and T. Lecroq and J.D. Pehoushek",
  title = "A Very Fast String Matching Algorithm for Small Alphabets and Long Patterns",
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@INPROCEEDINGS( Cha87,
  author = "D. Chase",
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@INPROCEEDINGS( CM97,
  author = "E. Chavez and J.L. Marroqu\'{\i}n",
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  editor = "R. Baeza-Yates",
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  year = 1997,
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@ARTICLE( Che92,
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@ARTICLE( Che2000,
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@INCOLLECTION( CS85,
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@INPROCEEDINGS( CS97,
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  year = 1997,
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@ARTICLE( CF87,
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@ARTICLE( CP90,
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@ARTICLE( CP94,
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@INPROCEEDINGS( CG94,
  author = "B. S. Chlebus and L. G{\c a}sieniec",
  title = "Optimal pattern matching on meshes",
  booktitle = proct#"11th "#stacs,
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@TECHREPORT( CK90,
  author = "M. Chodorow and J. L. Klarans",
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@ARTICLE( Cho90,
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@TECHREPORT( Cho91,
  author = "C. Choffrut",
  title = "Combinatoire et g{\'e}nome",
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@TECHREPORT( Cho93,
  author = "C. Choffrut",
  title = "The word problem for single relator special monoids - The state of art",
  type = "Rapport",
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@INPROCEEDINGS( CH98a,
  author = "C. Choffrut and S. Horwath",
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@INPROCEEDINGS( CL95b,
  author = "Y. Choi and T. W. Lam",
  title = "Two-Dimensional Pattern Matching on a Dynamic Library of Texts",
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  editor = "D.-Z. Du and M. Li",
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  year = 1995,
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@ARTICLE( CL97,
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  title = "Dynamic suffix tree and two-dimensional texts management",
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@INCOLLECTION( CS63,
  author = "N. Chomsky and M.-P. Sch{\"u}tzenberger",
  title = "The algebraic theory of context-free languages",
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  publisher = noho,
  address = amster,
  year = 1963,
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@INPROCEEDINGS( CHPZW91,
  author = "E. T. Chow and T. Hunkapiller and J. C. Peterson and B. A. Zimmerman and M. S. Waterman",
  title = "A Systolic Array Processor for Biological Information Signal Processing",
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  year = 1991,
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@ARTICLE( CR87b,
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@ARTICLE( CR87c,
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@ARTICLE( Chu98,
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@ARTICLE( CC87,
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  year = 1987,
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@TECHREPORT( CKK72,
  author = "V. Chv\'atal and D.A. Klarner and D.E. Knuth",
  title = "{Selected Combinatorial Research Problems}",
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  year = 1972
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@ARTICLE( CS75,
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@TECHREPORT( CS75b,
  author = "V. Chv{\'a}tal and D. Sankoff",
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@ARTICLE( Chu93,
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@ARTICLE( Chu92,
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@INPROCEEDINGS( CM96,
  author = "D. R. Clark and J. I. Munro",
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@ARTICLE( CW84,
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@ARTICLE( CHMCSS86,
  author = "B. Clift and D. Haussler and R. McConnell and T. D. Schneider and G. D. Stormo",
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@INPROCEEDINGS( Cob94,
  author = "A. L. Cobbs",
  title = "Fast Identification of Approximately Matching Substrings",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
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  year = 1994,
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@INPROCEEDINGS( Cob95,
  author = "A. L. Cobbs",
  title = "Fast approximate matching using suffix trees",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
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@ARTICLE( Coh98,
  author = "J. D. Cohen",
  title = "Hardware-assisted algorithm for full-text large-dictionary string matching using n-gram hashing",
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@INPROCEEDINGS( CK96,
  author = "M. Cohn and R. Khazan",
  title = "Parsing with Suffix and Prefix Dictionaries",
  booktitle = proc#dcc,
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  address = "Snowbird, UTah",
  editor = "J. A. Storer and M. Cohn",
  year = 1996,
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@INPROCEEDINGS( Col90,
  author = "R. Cole",
  title = "A new proof of the linearity of the {Boyer-Moore} string-matching algorithm",
  booktitle = "3rd Maryland Theoretical Science Day",
  year = 1990,
  pages = "?--?",
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@TECHREPORT( Col90b,
  author = "R. Cole",
  title = "Tight bounds on the complexity of the {Boyer-Moore} string matching algorithm",
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  number = 512,
  institution = "Courant Institute, New York University, NY",
  year = 1990,
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@INPROCEEDINGS( Col91,
  author = "R. Cole",
  title = "Tight bounds on the complexity of the {Boyer-Moore} string matching algorithm",
  booktitle = proct#"2nd "#soda,
  address = frisco,
  year = 1991,
  pages = "224--233",
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@ARTICLE( Col94,
  author = "R. Cole",
  title = "Tight bounds on the complexity of the {Boyer-Moore} string matching algorithm",
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  pages = "1075--1091",
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@INPROCEEDINGS( CCGGHMPR93,
  author = "R. Cole and M. Crochemore and Z. Galil and L. G{\c a}sieniec and R. Hariharan and S. Muthukrishnan and K. Park and W. Rytter",
  title = "Optimally fast parallel algorithms for preprocessing and pattern matching in one and two dimensions",
  booktitle = proct#"34th "#focs,
  address = "Palo Alto, CA",
  publisher = ieeecsp,
  year = 1993,
  pages = "248--258",
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@INPROCEEDINGS( CH92,
  author = "R. Cole and R. Hariharan",
  title = "Tighter bounds on the exact complexity of string matching",
  booktitle = proct#"33rd "#focs,
  address = "Pittsburgh, PA",
  publisher = ieeecsp,
  year = 1992,
  pages = "600--609",
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@INPROCEEDINGS( CH97,
  author = "R. Cole and R. Hariharan",
  title = "Tree Pattern Matching and Subset Matching in Randomized $O(n \log^3 m)$ Time",
  booktitle = proct#"29th "#stoc,
  address = "El Paso, TX",
  year = 1997,
  pages = "66--75",
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@ARTICLE( CH97b,
  author = "R. Cole and R. Hariharan",
  title = "Tighter Upper Bounds on the Exact Complexity of String Matching",
  journal = sicomp,
  volume = 26,
  number = 3,
  year = 1997,
  pages = "803--856",
)

@INPROCEEDINGS( CH98b,
  author = "R. Cole and R. Hariharan",
  title = "Approximate String Matching: A Faster Simpler Algorithm",
  booktitle = proct#"9th "#soda,
  address = frisco,
  year = 1998,
  pages = "463--472",
)

@INPROCEEDINGS( CH99,
  author = "R. Cole and R. Hariharan",
  title = "Dynamic {LCA} Queries on Trees",
  booktitle = proc#soda,
  year = 1999, 
  pages = "235--244",
)

@INPROCEEDINGS( CH2000,
  title = "Faster Suffix Tree Construction with Missing Suffix Links",
  author = "R. Cole and R. Hariharan",
  booktitle = proc#stoc,
  address = "Portland, Oregon",
  year = 2000,
  pages = "407--415",
)

@INPROCEEDINGS( CHPZ93,
  author = "R. Cole and R. Hariharan and M. Paterson and U. Zwick",
  title = "Which patterns are hard to find ?",
  booktitle = proct#"2nd Israeli Symposium on Theory of Computing and Systems",
  publisher = ieeecsp,
  year = 1993,
  pages = "59--68",
)

@ARTICLE( CHPZ95,
  author = "R. Cole and R. Hariharan and M. Paterson and U. Zwick",
  title = "Tighter lower bounds on the exact complexity of string matching",
  journal = sicomp,
  volume = 24,
  number = 1,
  year = 1995,
  pages = "30--45",
)

@INPROCEEDINGS( CILPR2001,
  author = "R. Cole and C. S. Iliopoulos and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Relations between $\delta$-matching and matching with don't care symbols: $\delta$-distinguishing morphisms",
  booktitle = proct#"12th "#awoca,
  address = "Bandung, Indonesia",
  editor = "E. Tri Baskoro",
  year = 2001,
  pages = "80--87",
)

@ARTICLE( CILPR2002b,
  author = "R. Cole and C. S. Iliopoulos and T. Lecroq and W. Plandowski and W. Rytter",
  title = "On Special Families of Morphisms Related to $\delta$-Matching and Don't Care Symbols",
  journal = ipl,
  volume = 85,
  number = 5,
  year = 2003,
  pages = "227--233",
)

@INCOLLECTION( CC87b,
  author = "J. F. Collins and A. F. W. Coulson",
  title = "Molecular sequence comparison and alignments",
  booktitle = "Nucleic acid and protein sequence analysis: A practical approach",
  editor = "M. J. Bishop and C. J Rawlings",
  publisher = "IRL Press",
  year = 1987,
  pages = "323--358",
 )

@ARTICLE( Col91b,
  author = "L. Colussi",
  title = "Correctness and efficiency of the pattern matching algorithms",
  journal = infcomp,
  volume = 95,
  number = 2,
  year = 1991,
  pages = "225--251",
)

@ARTICLE( Col94b,
  author = "L. Colussi",
  title = "Fastest pattern matching in strings",
  journal = jalgo,
  volume = 16,
  number = 2,
  year = 1994,
  pages = "163--189",
)

@ARTICLE( CD96,
  author = "L. Colussi and A. De Col",
  title = "A time and space efficient data structure for sring searching on large texts",
  journal = ipl,
  volume = 58,
  number = 5,
  year = 1996,
  pages = "217--222",
)

@INPROCEEDINGS( CGG90,
  author = "L. Colussi and Z. Galil and R. Giancarlo",
  title = "On the exact complexity of string matching",
  booktitle = proct#"31st "#focs,
  address = stlo,
  publisher = ieeecsp,
  year = 1990,
  pages = "135--144",
)

@ARTICLE( CT96,
  author = "L. Colussi and L. Toniolo",
  title = "How the character comparison order shapes the shift function of on-line pattern matching algorithms",
  journal = tcs,
  volume = 163,
  number = "1--2",
  year = 1996,
  pages = "117--144",
)

@TECHREPORT( Com79,
  author = "B. Commentz-Walter",
  title = "A string matching algorithm fast on the average",
  type = "Report",
  number = "79.09.007",
  institution = "IBM Scientific Center in Heidelberg",
  year = 1979,
)

@INPROCEEDINGS( Com79b,
  author = "B. Commentz-Walter",
  title = "A string matching algorithm fast on the average",
  booktitle = proct#"6th "#icalp,
  address = "Graz, Austria",
  editor = "H. A. Maurer",
  series = lncs,
  number = 71,
  publisher = svb,
  year = 1979,
  pages = "118--132",
)

@ARTICLE( CD89,
  author = "C. Consel and O. Danvy",
  title = "Partial evaluation of pattern matching in strings",
  journal = ipl,
  volume = 30,
  number = 2,
  year = 1989,
  pages = "79--86",
)

@INPROCEEDINGS( Coo71,
  author = "Cook",
  title = "Linear time simulation of deterministic two-way pushdown automata",
  booktitle = proct#"5th "#ifip,
  address = "Ljubljana, Yugoslavia",
  year = 1971,
  pages = "172--179",
)

@INPROCEEDINGS( Cop78,
  author = "G. P. Copeland",
  title = "String storage and searching database applications: implementation on the INDY backend kernel",
  booktitle = proct#"4th Workshop on Computer Architecture for Non-numeric Processing",
  address = newy,
  publisher = acmp,
  year = 1978,
  pages = "8--17",
)

@ARTICLE( CESS89,
  author = "N. G. Core and E. W. Edmiston and J. H. Saltz and R. M. Smith",
  title = "Supercomputers and Biological Sequence Comparison Algorithms",
  journal = "Comp. Biomed. Res.",
  volume = 22,
  year = 1989,
  pages = "497--515",
)

@ARTICLE( CP85,
  author = "R. Cori and D. Perrin",
  title = "Automates et commutations partielles",
  journal = rairoit,
  year = 1985,
  volume = 19,
  number = 1,
  pages = "21--32",
)

@BOOK( CLR90,
  author = "T. H. Cormen and C. E. Leiserson and R. L. Rivest",
  title = "Introduction to Algorithms",
  publisher = "MIT Press",
  year = 1990,
)

@ARTICLE( Cor88,
  author = "F. Corpet",
  title = "Multiple sequence alignment with hierarchical clustering",
  journal = nucacires,
  volume = 16,
  year = 1988,
  pages = "10881--10890",
)

@ARTICLE( CD98,
  author = "E. Coward and F. Drabl{\o}s",
  title = "Detecting periodic patterns in biological sequences",
  journal = bioinfo,
  volume = 14,
  number = 6,
  year = 1998,
  pages = "498--507",
)

@BOOK( Cra86,
  author = "T. C. Craven",
  title = "String Indexing",
  publisher = acap,
  address = "London, U. K.",
  year = 1986,
)

@aRTICLE( Cra88,
  author = "T. C. Craven",
  title = "Adapting of String Indexing Systems for Retrieval using Proximity Operators",
  journal = ipm,
  volume = 24,
  number = 2,
  year = 1988,
  pages = "133--140",
)

@TECHREPORT( Cro80b,
  author = "M. Crochemore",
  title = "D{\'e}termination optimale des r{\'e}p{\'e}titions dans un mot",
  type = "Rapport",
  number = "LITP 80-53",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1980,
)

@ARTICLE( Cro81,
  author = "M. Crochemore",
  title = "An optimal algorithm for computing the repetitions in a word",
  journal = ipl,
  volume = 12,
  number = 5,
  year = 1981,
  pages = "244--250",
)

@ARTICLE( Cro82,
  author = "M. Crochemore",
  title = "Sharp Characterizations of Squarefree Morphisms",
  journal = tcs,
  volume = 18,
  number = 2,
  year = 1982,
  pages = "221--226",
)

@TECHREPORT( Cro82b,
  author = "M. Crochemore",
  title = "R{\'e}sultats de d{\'e}cidabilit{\'e} pour les morphismes faiblement sans carr{\'e}",
  type = "Rapport",
  number = "LITP 82-38",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1982,
)

@TECHREPORT( Cro82d,
  author = "M. Crochemore",
  title = "Sur les ensembles in{\'e}vitables",
  type = "Rapport",
  number = "LITP 82-56",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1982,
)

@ARTICLE( Cro82e,
  author = "M. Crochemore",
  title = "A solution to {Berstel}'s problem {P3}",
  journal = beatcs,
  volume = 18,
  year = 1982,
  pages = "9--11",
)

@ARTICLE( Cro83,
  author = "M. Crochemore",
  title = "Recherche lin{\'e}aire d'un carr{\'e} dans un mot",
  journal = craspi,
  volume = 296,
  year = 1983,
  pages = "781--784",
)

@INCOLLECTION( Cro83a,
  author = "M. Crochemore",
  title = "Tests sur les morphismes faiblement sans carr{\'e}",
  booktitle = "Combinatorics on Words",
  editor = "L. Cummings",
  publisher = acap,
  year = 1983,
  pages = "63--89",
)

@PHDTHESIS( Cro83b,
  author = "M. Crochemore",
  title = "R{\'e}gularit{\'e}s {\'e}vitables",
  type = "Th{\`e}se d'{\'e}tat, {Rapport LITP} 83-43",
  school = "Universit{\'e} Paris 7, France",
  year = 1983,
)

@ARTICLE( Cro83c,
  author = "M. Crochemore",
  title = "A solution to {P12}",
  journal = beatcs,
  volume = 19,
  year = 1983,
  pages = "15--16",
)

@ARTICLE( Cro83d,
  author = "M. Crochemore",
  title = "Recherche lin{\'e}aire d'un carr{\'e} dans un mot",
  journal = craspi,
  volume = "T. 296",
  year = 1983,
  pages = "781--784",
)

@ARTICLE(Cro83e,
  author = "M. Crochemore",
  title = "Mots et morphismes sans carr{\'e}",
  journal = adiscm,
  volume = 17,
  year = 1983,
  pages = "235--245",
)

@ARTICLE( Cro84,
  author = "M. Crochemore",
  title = "Linear searching for a square in a word",
  journal = beatcs,
  volume = 24,
  year = 1984,
  pages = "66--72",
)

@INCOLLECTION( Cro85,
  author = "M. Crochemore",
  title = "Optimal factor tranducers",
  booktitle = "Combinatorial Algorithms on Words",
  editor = "A. Apostolico and Z. Galil",
  series = "NATO Advanced Science Institutes, Series F",
  volume = 12,
  publisher = svb,
  year = 1985,
  pages = "31--44",
)

@ARTICLE( Cro86,
  author = "M. Crochemore",
  title = "Transducers and repetitions",
  journal = tcs,
  volume = 45,
  number = 1,
  year = 1986,
  pages = "63--86",
)

@INPROCEEDINGS( Cro86b,
  author = "M. Crochemore",
  title = "Calcul de la f-distance de deux mots",
  booktitle = "Actes du s{\'e}minaire d'informatique th{\'e}orique du {L.I.T.P.}",
  publisher = "Universit{\'e}s Paris 6 et 7, France",
  year = 1986,
  pages = "25--36",
)

@ARTICLE( Cro86c,
  author = "M. Crochemore",
  title = "Computing {LCF} in linear time",
  journal = beatcs,
  volume = 30,
  year = 1986,
  pages = "57--61",
)

@INCOLLECTION( Cro87,
  author = "M. Crochemore",
  title = "Longest common factor of two words",
  booktitle = proct#"2nd "#tapsoft,
  address = "Pisa, Italy",
  editor = "H. Ehrig and R. Kowalski and G. Levi and U. Montanari",
  series = lncs,
  number = 249,
  publisher = svb,
  year = 1987,
  pages = "26--36",
)

@INPROCEEDINGS( Cro88,
  author = "M. Crochemore",
  title = "String matching with constraints",
  booktitle = proc#"13th "#mfcs,
  address = "Carlsbad, Czechoslovakia",
  editor = "M. Chytil and L. Janiga and V. Koubek",
  series = lncs,
  number = 324,
  publisher = svb,
  year = 1988,
  pages = "44--58",
)

@INPROCEEDINGS( Cro88b,
  author = "M. Crochemore",
  title = "Constant-space string-matching",
  booktitle = proct#"8th "#fsttcs,
  address = "Pune, India",
  editor = "K. V. Nori and S. Kumar",
  series = lncs,
  number = 338,
  publisher = svb,
  year = 1988,
  pages = "80--87",
)

@TECHREPORT( Cro88a,
  author = "M. Crochemore",
  title = "Compression de textes: les m{\'e}thodes",
  type = "Rapport",
  number = "LIPN 88--4",
  institution = "Universit{\'e} Paris-Nord, France",
  year = 1988,
)

@INCOLLECTION( Cro89,
  author = "M. Crochemore",
  title = "Data compression with substitution",
  booktitle = "Electronic, Dictionaries and Automata in Computational Linguistics",
  editor = "M. Gross and D. Perrin",
  series = lncs,
  number = 377,
  publisher = svb,
  year = 1989,
  pages = "1--16",
)

@INCOLLECTION( Cro89b,
  author = "M. Crochemore",
  title = "Automata and algorithms",
  booktitle = "Formal Properties of Finite Automata and Applications",
  editor = "J.-E. Pin",
  series = lncs,
  number = 386,
  publisher = svb,
  year = 1989,
  pages = "149--153",
)

@ARTICLE( Cro89c,
  author = "M. Crochemore",
  title = "String-matching and periods",
  journal = beatcs,
  volume = 39,
  year = 1989,
  pages = "149--153",
)

@INPROCEEDINGS( Cro90,
  author = "M. Crochemore",
  title = "Constant-space string-matching",
  booktitle = "Sequences, combinatorics, compression, security and transmission",
  editor = "R. M. Capocelli",
  publisher = svb,
  year = 1990,
  pages = "25--40",
)

@INPROCEEDINGS( Cro90b,
  author = "M. Crochemore",
  title = "A la recherche d'un mot",
  booktitle = "Actes des Journ{\'e}es Montoises",
  address = "Universit{\'e} de Mons-Hainaut, Belgique",
  editor = "V. Bruy{\`e}re",
  year = 1990,
  pages = "34--38",
)

@ARTICLE( Cro92,
  author = "M. Crochemore",
  title = "String-matching on ordered alphabets",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "33--47",
)

@TECHREPORT( Cro93,
  author = "M. Crochemore",
  title = "Off-line serial exact string searching",
  type = "Rapport",
  number = "93.1",
  institution = "Institut Gaspard Monge, Universit{\'e} de Marne la Vall{\'e}e",
  year = 1993,
)

@INCOLLECTION( Cro97,
  author = "M. Crochemore",
  title = "Off-line serial exact string searching",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 1,
  pages = "1--53",
)

@ARTICLE( Cro2003,
  author = "M. Crochemore",
  title = "Reducing Space for Index Implementation",
  journal = tcs,
  volume = 292,
  number = 1,
  year = 2003,
  pages = "185--197",
)

@ARTICLE( BCP89,
  author = "M. Crochemore and J. Berstel and J.-E. Pin",
  title = "Thue-Morse sequence and p-adic topology of the free monoid",
  journal = adiscm,
  volume = 76,
  year = 1989,
  pages = "89--94",
)

@ARTICLE( CCMR91,
  author = "M. Crochemore and M. Chytil and B. Monien and W. Rytter",
  title = "On the parallel recognition of unambiguous context-free languages",
  journal = tcs,
  volume = 81,
  number = 2,
  year = 1991,
  pages = "311--316",
)

@INPROCEEDINGS( CCGJLPR91,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and S. Jarominek and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Deux m{\'e}thodes pour acc{\'e}lerer l'algorithme de {Boyer-Moore}",
  booktitle = "Actes des 2e Journ{\'e}es franco-belges: Th{\'e}ories des Automates et Applications",
  address = "Rouen, France",
  editor = "D. Krob",
  series = "Publications de l'Universit{\'e} de Rouen",
  number = 176,
  year = 1991,
  pages = "45--63",
)

@INPROCEEDINGS( CCGJLPR92,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and S. Jarominek and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Speeding up two string matching algorithms",
  booktitle = proct#"9th "#stacs,
  address = "Cachan, France",
  editor = "A. Finkel and M. Jantzen",
  series = lncs,
  number = 577,
  publisher = svb,
  year = 1992,
  pages = "589--600",
)

@TECHREPORT( CCGJLPR92b,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and S. Jarominek and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Speeding up two string matching algorithms",
  type = "Rapport",
  number = "LITP 92.21",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1992,
)

@TECHREPORT( CCGJLPR93,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and S. Jarominek and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Fast practical multi-pattern matching",
  type = "Rapport",
  number = "93-3",
  institution = "Institut Gaspard Monge, Universit{\'e} de Marne la Vall{\'e}e",
  year = 1993,
)

@ARTICLE( CCGJLPR94,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and S. Jarominek and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Speeding up two string matching algorithms",
  journal = algo,
  volume = 12,
  number = "4/5",
  year = 1994,
  pages = "247--267",
)

@ARTICLE( CCGLPR99,
  author = "M. Crochemore and A. Czumaj and L. G{\c a}sieniec and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Fast practical multi-pattern matching",
  journal = ipl,
  volume = 71,
  number = "(3--4)",
  year = 1999,
  pages = "107--113",
)

@ARTICLE( CGGPR97,
  author = "M. Crochemore and Z. Galil and L. G{\c a}sieniec and K. Park and W. Rytter",
  title = "Constant-Time Randomized Parallel String Matching",
  journal = sicomp,
  volume = 26,
  number = 4,
  year = 1997,
  pages = "950--960",
)

@ARTICLE( CGHMR98,
  author = "M. Crochemore and L. G{\c a}sieniec and R. Hariharan and S. Muthukrishnan and W. Rytter",
  title = "A Constant Time Optimal Parallel Algorithm for Two-Dimensional Pattern Matching",
  journal = sicomp,
  volume = 27,
  number = 3,
  year = 1998,
  pages = "668--681",
)

@INPROCEEDINGS( CGPR95,
  author = "M. Crochemore and L. G{\c a}sieniec and W. Plandowski and W. Rytter",
  title = "Two-dimensional pattern matching in linear time and small space",
  booktitle = proct#"12th "#stacs,
  address = "Munich, Germany",
  editor = "E.W. Mayr and C. Puech",
  series = lncs,
  number = 900,
  publisher = svb,
  pages = "181--192",
  year = 1995,
)

@TECHREPORT( CGR92,
  author = "M. Crochemore and L. G{\c a}sieniec and W. Rytter",
  title = "Turbo-{BM}",
  type = "Rapport",
  number = "LITP 92.61",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1992,
)

@ARTICLE( CGR93,
  author = "M. Crochemore and L. G{\c a}sieniec and W. Rytter",
  title = "Two-dimensional pattern matching by sampling",
  journal = ipl,
  volume = 46,
  number = 4,
  year = 1993,
  pages = "159--162",
)

@ARTICLE( CGR99,
  author = "M. Crochemore and L. G{\c a}sieniec and W. Rytter",
  title = "Constant-space string-matching in sublinear average time",
  journal = tcs,
  volume = 218,
  number = 1,
  year = 1999,
  pages = "197--203",
)

@TECHREPORT( CG91,
  author = "M. Crochemore and P. Goralcik",
  title = "Mutually avoiding ternary words of small exponent",
  type = "Rapport",
  number = "LITP 91.26",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1991,
)

@ARTICLE( CG92,
  author = "M. Crochemore and P. Goralcik",
  title = "Mutually avoiding ternary words of small exponent",
  journal = ijac,
  volume = 1,
  number = 4,
  year = 1992,
  pages = "407--410",
)

@TECHREPORT( CH96a,
  author = "M. Crochemore and C. Hancart",
  title = "Automata for matching patterns",
  type = "Rapport",
  number = "LIR96.17 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1996,
)

@TECHREPORT( CH96b,
  author = "M. Crochemore and C. Hancart",
  title = "Pattern matching in strings",
  type = "Rapport",
  number = "LIR96.18 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1996,
)

@INCOLLECTION( CH97c,
  author = "M. Crochemore and C. Hancart",
  title = "Automata for matching patterns",
  booktitle = "Handbook of Formal Languages",
  volume = "2 Linear Modeling: Background and Application",
  editor = "G. Rozenberg and A. Salomaa",
  publisher = svb,
  year = 1997,
  chapter = 9,
  pages = "399--462",
)

@INCOLLECTION( CH98,
  author = "M. Crochemore and C. Hancart",
  title = "Pattern Matching in Strings",
  booktitle = "Algorithms and Theory of Computation Handbook",
  editor = "Mikhail J. Atallah",
  publisher = crcp,
  address = "Boca Raton, FL",
  year = 1998,
  pages = "11.1--11.28",
)

@ARTICLE( CHL2003,
  author = "M. Crochemore and C. Hancart and T. Lecroq",
  title = "A unifying look at the Apostolico-Giancarlo string matching algorithm",
  journal = jda,
  year = "",
  volume = 2,
  number = 1,
  note = "To appear",
)

@BOOK( CHL2001,
  author = "M. Crochemore and C. Hancart and T. Lecroq",
  title = "Algorithmique du texte",
  publisher = "Vuibert",
  year = 2001,
)


@ARTICLE( CIK98,
  author = "M. Crochemore and C. Iliopoulos and M. Korda",
  title = "Two-dimensional prefix string matching and covering on square matrix",
  journal = algo,
  volume = 20,
  number = 4,
  year = 1998,
  pages = "353--373",
)

@INPROCEEDINGS( CIKR98,
  author = "M. Crochemore and C. S. Iliopoulos and M. Korda and J. F. Reid",
  title = "Two-dimensional dictionary prefix-matching",
  booktitle = proct#"9th "#awoca,
  address = perth,
  editor = "C. S. Iliopoulos",
  year = 1998,
  pages = "147--158",
)

@INPROCEEDINGS( CILP2001,
  author = "M. Crochemore and C. S. Iliopoulos and T. Lecroq and Y. J. Pinzon",
  title = "Approximate string matching in musical sequences",
  booktitle = proct#"Prague Stringology Conference'01",
  address = "Prague, Czech Republic",
  editor = "M. Bal{\'\i}k and M. {\v S}im{\' a}nek",
  note = "Annual Report DC--2001--06",
  pages = "26--36",
  year = 2001,
)

@ARTICLE( CILPPR2003,
  author = "M. Crochemore and C.S. Iliopoulos and T. Lecroq and Y.J. Pinzon and W. Plandowski and W. Rytter",
  title = "Occurrence and Substring Heuristics for $\delta$-Matching",
  journal = "Fundamenta Informaticae",
  volume = "",
  number = "",
  year = 2003,
  pages = "",
  note = "Accepted",
)

@INPROCEEDINGS( CILPR2002a,
  author = "M. Crochemore and C. S. Iliopoulos and T. Lecroq and W. Plandowski and W. Rytter",
  title = "Three heuristics for $\delta$-matching: $\delta$-{BM} algorithms",
  booktitle = proct#"13th "#cpm,
  editor = "A. Apostolico and M. Takeda",
  series = lncs,
  number = 2373,
  year = 2002,
  address = "Fukuoka, Japan",
  publisher = svb,
  pages = "178--189",
)

@INPROCEEDINGS( CIPR2000,
  author = "M. Crochemore and C. S. Iliopoulos and Y. J. Pinzon and J. F. Reid",
  title = "A fast and practical bit-vector algorithm for the longest common subsequence problem",
  booktitle = proct#"11th "#awoca,
  address = hunter,
  editor = "L. Brankovic and J. Ryan",
  year = 2000,
  pages = "75--86",
)

@ARTICLE( CIPR2001,
  author = "M. Crochemore and C. S. Iliopoulos and Y. J. Pinzon and J. F. Reid",
  title = "A fast and practical bit-vector algorithm for the longest common subsequence problem",
  journal = ipl,
  volume = 80,
  number = 6,
  year = 2001,
  pages = "279--285",
)

@INPROCEEDINGS( CIY98,
  author = "M. Crochemore and C. S. Iliopoulos and H. Yu",
  title = "Algorithms for computing evolutionary chains in molecular and musical sequences",
  booktitle = proct#"9th "#awoca,
  address = perth,
  editor = "C. S. Iliopoulos",
  year = 1998,
  pages = "172--184",
)

@TECHREPORT( CL95,
  author = "M. Crochemore and T. Lecroq",
  title = "Pattern matching and text data compression algorithms",
  type = "Rapport",
  number = "LIR95.11 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1995,
)

@TECHREPORT( CrL95b,
  author = "M. Crochemore and T. Lecroq",
  title = "Pattern matching and text data compression algorithms",
  type = "Rapport",
  number = "IGM 95--21",
  institution = "Universit{\'e} de Marne-la-Vall{\'e}e, France",
  year = 1995,
)

@ARTICLE( CL96,
  author = "M. Crochemore and T. Lecroq",
  title = "Pattern matching and text data compression algorithms",
  journal = acmcs,
  volume = 28,
  number = 1,
  year = 1996,
  pages = "39--41",
)

@TECHREPORT( CL96a,
  author = "M. Crochemore and T. Lecroq",
  title = "Tight bounds on the complexity of the {Apostolico-Giancarlo} algorithm",
  type = "Rapport",
  number = "LIR96.12 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1996,
)

@TECHREPORT( CL96b,
  author = "M. Crochemore and T. Lecroq",
  title = "Text data compression algorithms",
  type = "Rapport",
  number = "LIR96.15 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1996,
)

@INPROCEEDINGS( CL96c,
  author = "M. Crochemore and T. Lecroq",
  title = "Tight bounds on the complexity of the {Apostolico-Giancarlo} algorithm",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "64--74",
)

@INCOLLECTION( CL96d,
  author = "M. Crochemore and T. Lecroq",
  title = "Pattern matching and text data compression algorithms",
  booktitle = "The Computer Science and Engineering Handbook",
  publisher = crcp,
  editor = "Allen B. Tucker Jr.",
  address = "Boca Raton, FL",
  year = 1996,
  chapter = 8,
  pages = "162--202",
)

@ARTICLE( CL97c,
  author = "M. Crochemore and T. Lecroq",
  title = "Tight bounds on the complexity of the {Apostolico-Giancarlo} algorithm",
  journal = ipl,
  volume = 63,
  number = 4,
  year = 1997,
  pages = "195--203",
)

@INCOLLECTION( CL98c,
  author = "M. Crochemore and T. Lecroq",
  title = "Text data compression algorithms",
  booktitle = "Algorithms and Theory of Computation Handbook",
  editor = "Mikhail J. Atallah",
  publisher = crcp,
  address = "Boca Raton, FL",
  year = 1998,
  pages = "12.1--12.23",
)

@TECHREPORT( CLW82,
  author = "M. Crochemore and M. Lerest and P. Wender",
  title = "Sur les ensembles in{\'e}vitables",
  type = "Rapport",
  number = "LITP 82--56",
  institution = "Universit{\'e} Paris 6 et 7, France",
  year = 1982,
)

@ARTICLE( CLW83,
  author = "M. Crochemore and M. Lerest and P. Wender",
  title = "An optimal test on finite unavoidable sets of words",
  journal = ipl,
  year = 1983,
  volume = 16,
  number = 4,
  pages = "179--180",
)

@INPROCEEDINGS( CMR98a,
  author = "M. Crochemore and F. Mignosi and A. Restivo",
  title = "Minimal Forbidden Words and Factor Automata",
  booktitle = proct#"23rd "#mfcs,
  address = "Brno, Czech Republic",
  editor = "L. Brim and J. Gruska and J. Zlatuska",
  series = lncs,
  number = 1450,
  publisher = svb,
  year = 1998,
  pages = "665--673",
)

@TECHREPORT( CMR98b,
  author = "M. Crochemore and F. Mignosi and A. Restivo",
  title = "Automata and Forbidden Words",
  number = "IGM 98-5",
  institution = "Institut Gaspard-Monge, Universit\'e de Marne-la-Vall\'ee, France",
  year = 1998,
)

@ARTICLE( CMR98c,
  author = "M. Crochemore and F. Mignosi and A. Restivo",
  title = "Automata and Forbidden Words",
  journal = ipl,
  volume = 67,
  number = 3,
  year = 1998,
  pages = "111--117",
)

@TECHREPORT( CMRS98,
  author = "M. Crochemore and F. Mignosi and A. Restivo and S. Salemi",
  title = "Data Compression using Antidictionaries",
  number = "IGM 98-10",
  institution = "Institut Gaspard-Monge, Universit\'e de Marne-la-Vall\'ee, France",
  year = 1998,
)

@INPROCEEDINGS( CMRS99,
  author = "M. Crochemore and F. Mignosi and A. Restivo and S. Salemi",
  title = "Text Compression Using Antidictionaries",
  booktitle = proct#"26th "#icalp,
  editor = "J. Wiedermann and P. van Emde Boas and M. Nielsen",
  series = lncs,
  number = 1644,
  publisher = svb,
  year = 1999,
  pages = "261--270",
)

@INPROCEEDINGS( CN90,
  author = "M. Crochemore and J. N{\'e}raud",
  title = "Unitary monoid with two generators: an algorithmic point of view",
  booktitle = proct#"15th "#caap,
  address = "Copenhagen, Denmark",
  editor = "A. Arnold",
  series = lncs,
  number = 431,
  publisher = svb,
  year = 1990,
  pages = "117--131",
)

@TECHREPORT( CP87a,
  author = "M. Crochemore and J.-P. P{\'e}cuchet",
  title = "Compression de dictionnaires",
  type = "Rapport",
  number = "LADL",
  institution = "Universit{\'e} Paris 7, France",
  year = 1987,
)

@TECHREPORT( CP87b,
  author = "M. Crochemore and J.-P. P{\'e}cuchet",
  title = "R{\'e}duction d'un lexique pour micro-ordinateur",
  type = "Rapport",
  number = "LADL",
  institution = "Universit{\'e} Paris 7, France",
  year = 1987,
)

@INPROCEEDINGS( CP88,
  author = "M. Crochemore and D. Perrin",
  title = "Pattern matching in strings",
  booktitle = proc#"4th Conference on Image Analysis and Processing",
  editor = "V. Cantoni and Di Gesu, V. and S. Levialdi",
  series = lncs,
  number = 249,
  publisher = "Plenum Press",
  year = 1988,
  pages = "67--79",
)

@TECHREPORT( CP88b,
  author = "M. Crochemore and D. Perrin",
  title = "Pattern matching in strings",
  type = "Rapport",
  number = "LITP 88.5",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1988,
)

@ARTICLE( CP88c,
  author = "M. Crochemore and D. Perrin",
  title = "Critical factorizations of words",
  journal = beatcs,
  volume = 34,
  year = 1988,
  pages = "47--52",
)

@TECHREPORT( CP89,
  author = "M. Crochemore and D. Perrin",
  title = "Two-way string-matching",
  type = "Rapport",
  number = "LITP 89-8",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1989,
)

@ARTICLE( CP91,
  author = "M. Crochemore and D. Perrin",
  title = "Two-way string-matching",
  journal = jacm,
  volume = 38,
  number = 3,
  year = 1991,
  pages = "651--675",
)

@ARTICLE( CR90,
  author = "M. Crochemore and W. Rytter",
  title = "Parallel construction of minimal suffix and factor automata",
  journal = ipl,
  volume = 35,
  number = 3,
  year = 1990,
  pages = "121--128",
)

@INPROCEEDINGS( CR90a,
  author = "M. Crochemore and W. Rytter",
  title = "Parallel computations on strings and arrays",
  booktitle = proct#"7th "#stacs,
  address = "Rouen, France",
  editor = "C. Choffrut and T. Lengauer",
  series = lncs,
  number = 415,
  publisher = svb,
  year = 1990,
  pages = "109--125",
)

@INPROCEEDINGS( CR90c,
  author = "M. Crochemore and W. Rytter",
  title = "Parallel construction of minimal suffix and factor automata",
  booktitle = proct#"15th "#mfcs,
  address = "Bansk{\'a} Bystrica, Czechoslovakia",
  editor = "B. Rovan",
  series = lncs,
  number = 452,
  publisher = svb,
  year = 1990,
  pages = "217--223",
)

@TECHREPORT( CR90d,
  author = "M. Crochemore and W. Rytter",
  title = "Testing square-freeness of strings by an optimal parallel algorithm in logarithmic time",
  type = "Rapport",
  number = "LITP 90-63",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1990,
)

@TECHREPORT( CR91,
  author = "M. Crochemore and W. Rytter",
  title = "Cubes, squares and time-space efficient string-searching",
  type = "Rapport",
  number = "LITP 91-47",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1991,
)

@ARTICLE( CR91b,
  author = "M. Crochemore and W. Rytter",
  title = "Usefulness of the Karp-Miller-Rosenberg algorithm in parallel computations on strings and arrays",
  journal = tcs,
  volume = 88,
  number = 1,
  year = 1991,
  pages = "59--82",
)

@ARTICLE( CR91d,
  author = "M. Crochemore and W. Rytter",
  title = "Efficient parallel algorithms to test square-freeness and factorize strings",
  journal = ipl,
  volume = 38,
  number = 2,
  year = 1991,
  pages = "57--60",
)

@INPROCEEDINGS( CR92,
  author = "M. Crochemore and W. Rytter",
  title = "Note on two-dimensional pattern-matching by optimal parallel algorithms",
  booktitle = proct#"2nd International Conference on Parallel Image Analysis",
  address = "Ube, Japan",
  editor = "A. Nakamura and M. Nivat and A. Saoudi and P. S. P. Wang and K. Inoue",
  publisher = svb,
  year = 1992,
  pages = "100--112",
)

@INPROCEEDINGS( CR93,
  author = "M. Crochemore and W. Rytter",
  title = "Periodic prefix in strings",
  booktitle = proc#"Sequences II",
  editor = "R. Capocelli and De Santis, A. and U. Vaccaro",
  publisher = svb,
  year = 1993,
  pages = "153--165",
)

@BOOK( CR94,
  author = "M. Crochemore and W. Rytter",
  title = "Text algorithms",
  publisher = oxup,
  year = 1994,
)

@ARTICLE( CR94b,
  author = "M. Crochemore and W. Rytter",
  title = "On two-dimensional pattern-matching by optimal parallel algorithms",
  journal = tcs,
  volume = 132,
  number = 2,
  year = 1994,
  pages = "403--414",
)

@ARTICLE( CR95,
  author = "M. Crochemore and W. Rytter",
  title = "Squares, cubes and time-space efficient string-searching",
  journal = algo,
  volume = 13,
  number = 5,
  year = 1995,
  pages = "405--425",
)

@INPROCEEDINGS( CR95b,
  author = "M. Crochemore and W. Rytter",
  title = "On Linear-Time Alphabet-Independent 2-Dimensional Pattern Matching",
  booktitle = proct#"2nd "#latin,
  address = "Valpara{\'\i}so, Chile",
  editor = "R.A. Baeza-Yates and E. Goles and P.V. Poblete",
  series = lncs,
  number = 911,
  publisher = svb,
  year = 1995,
  pages = "220--229",
)

@INPROCEEDINGS( CV97,
  author = "M. Crochemore and R. V{\'e}rin",
  title = "Direct construction of compact directed acyclic word graphs",
  publisher = svb,
  booktitle = proct#"8th "#cpm,
  address = aarhus,
  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  year = 1997,
  pages = "116--129",
)

@INCOLLECTION( CV97b,
  author = "M. Crochemore and R. V{\'e}rin",
  title = "On Compact Directed Acyclic Word Graphs",
  booktitle = "Structures in Logic and Computer Science",
  editor = "J. Mycielski and G. Rozenberg and A. Salomaa",
  series = lncs,
  number = 1261,
  publisher = svb,
  year = 1997,
  pages = "192--211",
)

@TECHREPORT( CZ89,
  author = "M. Crochemore and M. Zipstein",
  title = "Transducteurs arithm{\'e}tiques",
  type = "Rapport",
  number = "LITP 89.12",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1989,
)

@INPROCEEDINGS( CGP97,
  author = "M. Cryan and L. A. Goldberg and C. A. Phillips",
  title = "Approximation algorithms for the fixed-topology phylogenetic number problem",
  booktitle = proct#"8th "#cpm,
  address = aarhus,
  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  publisher = svb,
  year = 1997,
  pages = "130--149",
)

@ARTICLE( CIIK83,
  author = "Culik II, K. and J. Karhum{\"a}ki",
  title = "Systems of equations over a free monoid and Ehrenfeucht's conjecture",
  journal = discmath,
  volume = 43,
  year = 1983,
  pages = "139--153",
)

@TECHREPORT( CH91,
  author = "P. Cull and J. Holloway",
  title = "A divide and conquer approach to approximate string matching",
  type = "Report",
  number = "TR-91-50-1",
  institution = "Department of Computer Science, Oregon State University",
  year = 1991,
)

@INPROCEEDINGS( CH94,
  author = "P. Cull and J. L. Holloway",
  title = "Reconstructing sequences from shotgun data",
  booktitle = "Sequences: Combinatorics, Compression, Security, and Transmission",
  publisher = svb,
  year = 1991,
)

@TECHREPORT( CHC97,
  author = "P. Cull and J. Holloway and J. Cavener",
  title = "Walking Tree Heuristics for String Matching and Gene Location",
  type = "Technical Report",
  number = "97-20-02",
  institution = "Oregon State University",
  year = 1997,
)

@INPROCEEDINGS( Cum81,
  author = "L. J. Cummings",
  title = "Overlapping substrings and {Thue}'s problem",
  booktitle = proct#"3rd Caribbean Conference on Combinatorics and Computing",
  address = "University of the West Indies, Cave Hill",
  year = 1981,
  pages = "99--109",
)

@ARTICLE( CW97,
  author = "L. J. Cummings and W. F. Smyth",
  title = "Weak repetitions in strings",
  journal = jcmcc,
  volume = 24,
  year = 1997,
  pages = "33--48",
)

@ARTICLE( Cum83,
  author = "L. J. Cummings",
  title = "Strongly {$q$}th power-free strings",
  journal = adiscm,
  volume = 17,
  year = 1983,
  pages = "247--252",
)

@INPROCEEDINGS( CFGMT97,
  author = "A. Czumaj and P. Ferragina and L. G{\c a}sieniec and S. Muthukrishnan and J. L. Tr{\"a}ff",
  title = "The architecture of a software library for string processing",
  booktitle = proct#"Workshop on Algorithm Engineering",
  address = "Venice, Italy",
  year = 1997,
  pages ="166--176",
)

@INPROCEEDINGS( CG2000,
  author = "A. Czumaj and L. G{\c a}sieniec",
  title = "On the Complexity of Determining the Period of a String",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "412--422",
)

@INPROCEEDINGS( CGPR94,
  author = "A. Czumaj and L. G{\c a}sieniec and M. Piotrow and W. Rytter",
  title = "Parallel and sequentiel approximation of shortest superstrings",
  booktitle = proct#"4th "#swat,
  address = aarhus,
  editor = "E. M. Schmidt and S. Skyum",
  series = lncs,
  number = 824,
  publisher = svb,
  year = 1994,
  pages ="95--106",
)

@ARTICLE( CGPR97,
  author = "A. Czumaj and L. G{\c a}sieniec and M. Piotrow and W. Rytter",
  title = "Sequential and Parallel Approximation of Shortest Superstrings",
  journal = jalgo,
  volume = 23,
  number = 1,
  year = 1997,
  pages = "74--100",
)

% DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

@INPROCEEDINGS( Daa98,
  author = "A. Daaboul",
  title = "Local prediction for lossless image compression",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "44--50",
)

@MASTERSTHESIS( Dah98,
  author = "B. Dahanayake",
  title = "Generalized Repetitions: A New Approach",
  type = "{M. Sc. Thesis}",
  school = "Department of Computer Science and Systems, McMaster University, Canada",
  year = 1998,
)

@ARTICLE( Dam64,
  author = "F. Damerau",
  title = "A technique for computer detection and correction of spelling errors",
  journal = cacm,
  volume = 7,
  number = 3,
  year = 1994,
  pages = "171--176",
)

@PHDTHESIS( Dan94,
  author = "V. Dan{\v c}{\'\i}k",
  title = "Expected length of longest common subsequences",
  type = "{Ph. D. Thesis}",
  school = "Computer Science Departement, University of Warwick, UK",
  year = 1994,
)

@INPROCEEDINGS( Dan95,
  author = "V. Dan{\v c}{\'\i}k",
  title = "Common subsequences and supersequences and their expected length",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "55--63",
)

@INPROCEEDINGS( DP94,
  author = "V. Dan{\v c}{\'\i}k and M. Paterson",
  title = "Upper bounds for the expected length of a longest common subsequence of two binary sequences",
  booktitle = proct#"11th "#stacs,
  address = caen,
  editor = "P. Enjalbert and E. W. Mayr and K. W. Wagner",
  series = lncs,
  number = 775,
  publisher = svb,
  year = 1994,
  pages = "669--678",
)

@ARTICLE( Dan91,
  author = "O. Danvy",
  title = "Semantics-directed compilation of nonlinear patterns",
  journal = ipl,
  volume = 37,
  number = 6,
  year = 1991,
  pages = "315--322",
)

@MASTERSTHESIS( Dar92,
  author = "T. Darabont",
  title = "Approximate string matching with $k$ mismatches",
  school = "Faculty of Electrical Engineering, Czech Technical University, Prague, Czech Republic",
  year = 1992,
)

@INPROCEEDINGS( DB92,
  author = "D'Auriol, B. J. and V. C. Bhavsar",
  title = "Evaluation of the Multi-Transputer Applications of the Weighted {Levenshtein} Distance Computation",
  booktitle = proct#"Int. Conf. Parall. Comp. Transput. Appl.",
  year = 1992,
)

@INPROCEEDINGS( DFGGK97,
  author = "G. Das and R. Fleischer and L. G{\c a}sieniec and D. Gunopulos and J. K{\"a}rkk{\"a}inen",
  title = "Episode matching",
  booktitle = proct#"8th "#cpm,
  address = aarhus,
  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  publisher = svb,
  year = 1997,
  pages = "12--27",
)

@ARTICLE( Dav62,
  author = "L. Davidson",
  title = "Retrieval of misspelled names in an airlines passengerrecord system",
  journal = cacm,
  volume = 5,
  number = 3,
  year = 1962,
  pages = "169--171",
)

@ARTICLE( Dav82,
  author = "D.J.M. Davies",
  title = "String Searching in Text Editors",
  journal = spe,
  volume = 12,
  number = 8,
  year = 1982,
  pages = "709--717",
)

@ARTICLE( DB86,
  author = "G. Davies and S. Bowsher",
  title = "Algorithms for pattern matching",
  journal = spe,
  volume = 16,
  number = 6,
  year = 1986,
  pages = "575--601",
)

@ARTICLE( DIS94,
  author = "J. W. Daykin and C. S. Iliopoulos and W. F. Smyth",
  title = "Parallel {RAM} algorithms for factorizing words",
  journal = tcs,
  volume = 127,
  number = 1,
  year = 1994,
  pages = "53--67",
)

@TECHREPORT( DIL91,
  author = "De Iaco, B. and F. Luccio",
  title = "Finding all the palindromes of a string in linear time and space",
  type = "Report",
  number = "TR 3/91",
  institution = "Department of Informatics, University of Pisa, Italy",
  year = 1991,
)

@ARTICLE( DIL92,
  author = "De Iaco, B. and F. Luccio",
  title = "Finding all the palindromes in a binary tree in linear time and space",
  journal = ipl,
  volume = 44,
  number = 2,
  year = 1992,
  pages = "73--77",
)

@ARTICLE( DJRFS81,
  author = "P. L. Deininger and D. J. Jolly and C. M. Rubin and T.  Friedmann and C. W. Schmid",
  title = "Base sequence studies of 300 nucleotide renatured repeated human {DNA} clones",
  journal = jmolbiol,
  volume = 151,
  year = 1981,
  pages = "17--33",
)

@ARTICLE( Dek75,
  author = "J. Deken",
  title = "Some limit results for longest common subsequences",
  journal = japrob,
  volume = 12,
  year = 1975,
  pages = "306--315",
)

@ARTICLE( dL81,
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% EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 

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% FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

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@INPROCEEDINGS( FM96b,
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  author = "D. Fern{\'a}ndez-Baca and T. Sepp{\"a}l{\"a}inen and G. Slutzki",
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@PHDTHESIS( Fer97b,
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@INPROCEEDINGS( FG95b,
  author = "P. Ferragina and R. Grossi",
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@INPROCEEDINGS( FG95c,
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@ARTICLE( FG98,
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@ARTICLE( FG99,
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@ARTICLE( FG99b,
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@INPROCEEDINGS( FGM97,
  author = "P. Ferragina and R. Grossi and M. Montangero",
  title = "A Note on Updating Suffix Tree Labels",
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@ARTICLE( FGM98,
  author = "P. Ferragina and R. Grossi and M. Montangero",
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@ARTICLE( FL98,
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@INPROCEEDINGS( Fra98,
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@ARTICLE( FKS2000,
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@INPROCEEDINGS( FLS2000,
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@PHDTHESIS( Fra95,
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ARTICLE( FKS84,
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@INPROCEEDINGS( Fu95,
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@INPROCEEDINGS( Fu96,
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@ARTICLE( SFP96,
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% GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG

@INPROCEEDINGS( Gal76,
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@ARTICLE( Gal76b,
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@ARTICLE( Gal77,
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@ARTICLE( Gal78,
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@INPROCEEDINGS( Gal78b,
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@ARTICLE( Gal79,
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@ARTICLE( Gal81,
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@TECHREPORT( Gal83,
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@INCOLLECTION( Gal85b,
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  title = "Hunting lions in the desert optimally or a constant time optimal parallel string matching algorithms",
  booktitle = proct#"24th "#stoc,
  address = "Victoria, Canada",
  publisher = acmp,
  year = 1992,
  pages = "69--76",
)

@ARTICLE( GG86,
  author = "Z. Galil and R. Giancarlo",
  title = "Improved string matching with {$k$} mismatches",
  journal = sigactn,
  volume = 17,
  number = 4,
  year = 1986,
  pages = "52--54",
)

@ARTICLE( GG87,
  author = "Z. Galil and R. Giancarlo",
  title = "Parallel string matching with {$k$} mismatches",
  journal = tcs,
  volume = 51,
  number = 1,
  year = 1987,
  pages = "341--348",
)

@TECHREPORT( GG87b,
  author = "Z. Galil and R. Giancarlo",
  title = "Data Structures and Algorithms for approximate String Matching",
  type = "Report",
  number = "CUCS-299-87",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1987,
)

@ARTICLE( GG88,
  author = "Z. Galil and R. Giancarlo",
  title = "Data structures and algorithms for approximate string matching",
  journal = jcompl,
  volume = 4,
  number = 1,
  year = 1988,
  pages = "33--72",
)

@ARTICLE( GG89,
  author = "Z. Galil and R. Giancarlo",
  title = "Speeding up dynamic programming with applications to molecular biology",
  journal = tcs,
  volume = 64,
  number = 1,
  year = 1989,
  pages = "107--118",
)

@ARTICLE( GG91,
  author = "Z. Galil and R. Giancarlo",
  title = "On the exact complexity of string matching: lower bounds",
  journal = sicomp,
  volume = 20,
  number = 6,
  year = 1991,
  pages = "1008--1020",
)

@ARTICLE( GG92,
  author = "Z. Galil and R. Giancarlo",
  title = "On the exact complexity of string matching: upper bounds",
  journal = sicomp,
  volume = 21,
  number = 3,
  year = 1992,
  pages = "407--437",
)

@TECHREPORT( GGP91,
  author = "Z. Galil and R. Giancarlo and K. Park",
  title = "Fully Dynamic Dictionary Matching",
  type = "Report",
  number = "CUCS-043-91",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1991,
)

@INPROCEEDINGS( GP89,
  author = "Z. Galil and K. Park",
  title = "An improved algorithm for approximate string matching",
  booktitle = proct#"16th "#icalp,
  address = stressa,
  editor = "G. Ausiello and M. Dezani-Ciancaglini and Ronchi Della Rocca, S.",
  series = lncs,
  number = 372,
  publisher = svb,
  year = 1989,
  pages = "394--404",
)

@TECHREPORT( GP89b,
  author = "Z. Galil and K. Park",
  title = "An Improved Algorithm for Approximate String Matching",
  type = "Report",
  number = "CUCS-468-89",
  institution = "Computer Science Department, Columbia University, NY",
  year = 1989,
)

@ARTICLE( GP90,
  author = "Z. Galil and K. Park",
  title = "A linear-time algorithm for concave one-dimensional dynamic programming",
  journal = ipl,
  volume = 33,
  number = 6,
  year = 1990,
  pages = "309--311",
)

@ARTICLE( GP90b,
  author = "Z. Galil and K. Park",
  title = "An improved algorithm for approximate string matching",
  journal = sicomp,
  volume = 19,
  number = 6,
  year = 1990,
  pages = "989--999",
)

@ARTICLE( GP92,
  author = "Z. Galil and K. Park",
  title = "Dynamic programming with convexity, concavity, and sparsity",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "49--76",
)

@INPROCEEDINGS( GP92b,
  author = "Z. Galil and K. Park",
  title = "Truly alphabet-independent two-dimensional pattern matching",
  booktitle = proct#"33th "#focs,
  address = "Pittsburgh, PA",
  publisher = ieeecsp,
  year = 1992,
  pages = "247--256",
)

@ARTICLE( GP96,
  author = "Z. Galil and K. Park",
  title = "Alphabet-independent two-dimensional witness computation",
  journal = sicomp,
  volume = 25,
  number = 5,
  year = 1996,
  pages = "907--935",
)

@ARTICLE( GR92,
  author = "Z. Galil and Y. Rabani",
  title = "On the space Complexity of Some Algorithms for Sequence Comparison",
  journal = tcs,
  volume = 95,
  number = 2,
  year = 1992,
  pages = "231--244",
)

@INPROCEEDINGS( GS77,
  author = "Z. Galil and J. Seiferas",
  title = "Saving space in fast string-matching",
  booktitle = proct#"18th "#focs,
  address = "Providence, Rhode Island",
  publisher = ieeecsp,
  year = 1977,
  pages = "179--188",
)

@INPROCEEDINGS( GS76,
  author = "Z. Galil and J. Seiferas",
  title = "Recognizing certain repetitions and reversals within strings",
  booktitle = proct#"17th "#focs,
  address = "Houston, TX",
  publisher = ieeecsp,
  year = 1976,
  pages = "236--252",
)

@ARTICLE( GS78,
  author = "Z. Galil and J. Seiferas",
  title = "A linear-time on-line recognition algorithm for ``Palstars''",
  journal = jacm,
  volume = 25,
  number = 1,
  year = 1978,
  pages = "102--111",
)

@ARTICLE( GS80,
  author = "Z. Galil and J. Seiferas",
  title = "Saving space in fast string-matching",
  journal = sicomp,
  volume = 9,
  number = 2,
  year = 1980,
  pages = "417--438",
)

@ARTICLE( GS81,
  author = "Z. Galil and J. Seiferas",
  title = "Linear-time string matching using only a fixed number of local storage locations",
  journal = tcs,
  volume = 13,
  number = 3,
  year = 1981,
  pages = "331--336",
)

@INPROCEEDINGS( GS81b,
  author = "Z. Galil and J. Seiferas",
  title = "Time-space optimal string matching",
  booktitle = proct#"13th "#stoc,
  address = "Milwaukee, Wisconsin",
  year = 1981,
  pages = "106--113",
)

@ARTICLE( GS83,
  author = "Z. Galil and J. Seiferas",
  title = "Time-space optimal string matching",
  journal = jcss,
  volume = 26,
  number = 3,
  year = 1983,
  pages = "280--294",
)

@INCOLLECTION( GY97,
  author = "Z. Galil and I. Yudkiewicz",
  title = "On-line parallel exact string searching",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 2,
  pages = "55--88",
)

@ARTICLE( GMS80,
  author = "J. Gallant and D. Maier and J. Storer",
  title = "On finding minimal length superstring",
  journal = jcss,
  volume = 20,
  number = 1,
  year = 1980,
  pages = "50--58",
)

@INPROCEEDINGS( Gar93,
  author = "E. Garel",
  title = "Minimal separators of two words",
  booktitle = proct#"4th "#cpm,
  address = padova,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 684,
  publisher = svb,
  year = 1993,
  pages = "35--53",
)

@ARTICLE( Gar97,
  author = "E. Garel",
  title = "S\'eparateurs dans les mots infinis engendr\'es par morphismes",
  journal = tcs,
  volume = 180,
  number = "1--2",
  year = 1997,
  pages = "81--113",
)

@BOOK( GJ79,
  author = "M. R. Garey and D. S. Johnson",
  title = "Computers and intractability: a guide to the theory of NP-completeness",
  publisher = "Freeman",
  address = newy,
  year = 1979,
)

@INPROCEEDINGS( GIK97,
  author = "L. G{\c a}sieniec and P. Indyk and P. Krysta",
  title = "External inverse pattern matching",
  booktitle = proct#"8th "#cpm,
  address = aarhus,
  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  publisher = svb,
  year = 1997,
  pages = "90--101",
)

@INPROCEEDINGS( GJL2000,
  author = "L. G{\c a}sieniec and J. Jansson and A. Lingas",
  title = "Approximation Algorithms for Hamming Clustering Problems",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "108--118",
)

@INPROCEEDINGS( GKPR96,
  author = "L. G{\c a}sieniec and M. Karpinski and W. Plandowski and W. Rytter",
  title = "Randomized Efficient Algorithms for Compressed Strings: The Finger-Print Approach (Extended Abstract)",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "39--49",
)

@INPROCEEDINGS( GP94,
  author = "L. G{\c a}sieniec and K. Park",
  title= "Work-time optimal parallel prefix matching",
  booktitle = proct#"2nd "#esa,
  address = "Utrecht, The Netherlands",
  editor = "J. van Leeuwen",
  series = lncs,
  number = 855,
  publisher = svb,
  year = 1994,
  pages = "471--482",
)

@INPROCEEDINGS( GPR95,
  author = "L. G{\c a}sieniec and W. Plandowski and W. Rytter",
  title = "Constant-space string matching with smaller number of comparisons: sequential sampling",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "78--89",
)

@ARTICLE( GPR95b,
  author = "L. G{\c a}sieniec and W. Plandowski and W. Rytter",
  title = "The zooming method: a recursive approach to time-space efficient string-matching",
  journal = tcs,
  volume = 147,
  number = "1--2",
  year = 1995,
  pages = "19--30",
)

@INPROCEEDINGS( GR99,
  author = "L. G{\c a}sieniec and W. Rytter",
  title = "Searching patterns with short variables",
  booktitle = proct#"10th "#awoca,
  address = perth,
  editor = "R. Raman and J. Simpson",
  year = 1999,
  pages = "145--151",
)

@ARTICLE( GK97,
  author = "M. S. Gelfand and E.V. Koonin",
  title = "Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes",
  journal = nucacires,
  volume = 25,
  year = 1997,
  pages = "2430--2439",
)
 
@ARTICLE( GKM00,
  author = "M. S. Gelfand and E. V. Koonin and A. A. Mironov",
  title = "Prediction of transcription regulatory sites in Archaea by a comparative genomic approach",
  journal = nucacires,
  volume = 28,
  number = 3,
  year = 2000,
  pages = "695--705",
)

@ARTICLE( GKP92,
  title = "Extendable words in nucleotide sequences",
  author = "M. S. Gelfand and C. G. Kozhukhin and P. A. Pevzner",
  journal = cabios,
  volume = 8,
  year = 1992,
  pages = "129--135",
)

@INPROCEEDINGS( GMP96,
  author = "M. S. Gelfand and A. A. Mironov and P. A. Pevzner",
  title = "Spliced Alignment: A New Approach to Gene Recognition",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "141--158",
)

@ARTICLE( GGL94,
  author = "M. Ger{\'e}b-Graus and M. Li",
  title = "Three one-way heads cannot do string matching",
  journal = jcss,
  volume = 48,
  number = 1,
  year = 1994,
  pages = "1--8",
)

@ARTICLE( Gia98,
  author = "D. Giammarresi",
  title = "Periodicities on trees",
  journal = tcs,
  volume = 205,
  number = "1/2",
  year = 1998,
  pages = "145--181",
)

@INPROCEEDINGS( GR91,
  author = "D. Giammarresi and A. Restivo",
  title = "Recognizable picture languages",
  booktitle = proct#"1st International Colloquium on Parallel Image Processing",
  year = 1991,
  pages = "?--?",
)

@ARTICLE( GR92b,
  author = "D. Giammarresi and A. Restivo",
  title = "Recognizable picture languages",
  journal = "Internat. J. Pattern Recognition and Artificial Intelligence",
  volume = 6,
  number = "2--3",
  year = 1992,
  pages = "241--256",
)

@INPROCEEDINGS( GRST94,
  author = "D. Giammarresi and A. Restivo and S. Seibert and W. Thomas",
  title = "Monadic second-order logic over pictures and recognizability",
  booktitle = proct#"11th "#stacs,
  address = caen,
  editor = "P. Enjalbert and E. W. Mayr and K. W. Wagner",
  series = lncs,
  number = 775,
  publisher = svb,
  year = 1994,
  pages = "365--375",
)

@PHDTHESIS( Gia90,
  author = "R. Giancarlo",
  title = "Efficient algorithms on strings",
  type = "{Ph. D. Thesis}",
  school = "Departement of Computer Science, Columbia University, New-York",
  year = 1990,
)

@INPROCEEDINGS( Gia93,
  author = "R. Giancarlo",
  title = "The suffix tree of a square matrix with applications",
  booktitle = proct#"4th "#soda,
  address = "Austin, TX",
  year = 1993,
  pages = "402--411",
)

@INPROCEEDINGS( Gia93b,
  author = "R. Giancarlo",
  title = "An Index Data Structure For Matrices, with Applications to Fast Two-Dimensional Pattern Matching",
  booktitle = proct#"3rd "#wads,
  address = montreal,
  editor = "F. Dehne and J.-R. Sack and N. Santoro and S. Whitesides",
  series = lncs,
  number = 709,
  publisher = svb,
  year = 1993,
  pages = "337--348",
)

@ARTICLE( Gia95,
  author = "R. Giancarlo",
  title = "A generalization of the suffix tree to square matrices, with applications",
  journal = sicomp,
  volume = 24,
  number = 3,
  year = 1995,
  pages = "520--562",
)

@INCOLLECTION( Gia97,
  author = "R. Giancarlo",
  title = "Dynamic programming: special cases",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 7,
  pages = "201--236",
)

@INPROCEEDINGS( GG93,
  author = "R. Giancarlo and R. Grossi",
  title = "Parallel construction and query of suffix trees for two-dimensional matrices",
  booktitle = proct#"5th ACM Symposium on Parallel Algorithms and Architectures",
  address = "Velen, Germany",
  publisher = acmp,
  year = 1993,
  pages = "86--97",
)

@INPROCEEDINGS( GG95,
  author = "R. Giancarlo and R. Grossi",
  title = "Multi-dimensional pattern matching with dimensional wildcards",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "90--101",
)

@ARTICLE( GG96,
  author = "R. Giancarlo and R. Grossi",
  title = "On the Construction of Classes of Suffix Trees for Square Matrices: Algorithms and Applications",
  journal = infcomp,
  volume = 130,
  number = 2,
  year = 1996,
  pages = "151--182",
)

@ARTICLE( GG97,
  author = "R. Giancarlo and R. Grossi",
  title = "Multi-Dimensional Pattern Matching with Dimensional Wildcards: Data Structures and Optimal On-Line Search Algorithms",
  journal = jalgo,
  volume = 24,
  number = 2,
  year = 1997,
  pages = "223--265",
)

@INCOLLECTION( GG97b,
  author = "R. Giancarlo and R. Grossi",
  title = "Suffix tree data structures for matrices",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 10,
  pages = "293--340",
)

@ARTICLE( GR86,
  author = "A. Gibbons and W. Rytter",
  title = "On the decidability of some problems about rational subsets of free partially commutative monoids",
  journal = tcs,
  volume = 48,
  number = "2--3",
  year = 1986,
  pages = "329--337",
)

@BOOK( GR88,
  author = "A. Gibbons and W. Rytter",
  title = "Efficient parallel algorithms",
  publisher = caup,
  address = "Cambridge",
  year = 1988,
)

@ARTICLE( GR89,
  author = "A. Gibbons and W. Rytter",
  title = "Optimal parallel algorithms for dynamic expression evaluation and context-free recognition",
  journal = infcomp,
  volume = 81,
  number = 1,
  year = 1989,
  pages = "32--45",
)

@INPROCEEDINGS( Gie2000,
  author = "R. Giegerich",
  title = "Explaining and Controlling Ambiguity in Dynamic Programming",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "46--59",
)

@INPROCEEDINGS( GK94,
  author = "R. Giegerich and S. Kurtz",
  title = "Suffix trees in the functional programming paradigm",
  booktitle = "Programming Languages and Systems",
  year = 1994,
  pages = "225--240",
)

@INPROCEEDINGS( GK94b,
  author = "R. Giegerich and S. Kurtz",
  title = "Suffix Trees in the Functional Programming Paradigm",
  booktitle = proct#"5th "#esop,
  address = "Edinburgh, U.K.",
  editor = "D. Sannella",
  series = lncs,
  number = 788,
  publisher = svb,
  year = 1994,
  pages = "225--240",
)

@ARTICLE( GK95,
  author = "R. Giegerich and S. Kurtz",
  title = "A comparison of imperative and purely functional suffix tree constructions",
  journal = scp,
  volume = 25,
  number = "2--3",
  year = 1995,
  pages = "187--218",
)

@ARTICLE( GK97b,
  author = "R. Giegerich and S. Kurtz",
  title = "From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction",
  journal = algo,
  volume = 19,
  number = 3,
  year = 1997,
  pages = "331--353",
)

@INPROCEEDINGS( GKHO97,
  author = "R. Giegerich and S. Kurtz and F. Hischke and E. Ohlebusch",
  title = "A General Technique to Improve Filter Algorithms for Approximate String Matching",
  booktitle = proct#"4th "#wsp,
  address = "Valparaiso, Chile",
  editor = "R. Baeza-Yates",
  publisher = cup,
  year = 1997,
  pages = "38--52",
)

@INPROCEEDINGS( GKR99,
  author = "R. Giegerich and S. Kurtz and J. Stoye",
  title = "Efficient implementation of lazy suffix trees",
  booktitle = proct#"3rd "#wae,
  address = london,
  editor = "J.S. Vitter and C.D. Zaroliagis",
  series = lncs,
  number = 1668,
  publisher = svb,
  year = 1999,
  pages = "30--42",
)

@ARTICLE( Gil87,
  author = "W. Gilbert",
  title = "Genome sequencing: Creating a new biology for the twenty--first century",
  journal = ist,
  volume = 3,
  year = 1987,
  pages = "26--35",
)

@ARTICLE (GK82,
  author = "W. B. Goad and M. I. Kanehisa",
  title = "Pattern recognition in nucleic acid sequences. {I}.  {A} general method for finding local homologies and symmetries",
  journal = nucacires,
  volume = 10,
  year = 1982,
  pages = "247--263",
)

@INPROCEEDINGS( GC99,
  author = "H. Goeman and M. Clausen",
  title = "A new practical linear space algorithm for the longest common subsequence problem",
  booktitle = proct#pscw#"~'99",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--99--05",
  year = 1999,
  pages = "40--60",
)

@INPROCEEDINGS( GGPSW95,
  author = "L. A. Goldberg and P. W. Goldberg and C. A. Philipps and E. Sweedyk and T. Warnow",
  title = "Minimizing phylogenetic number to find good evolutionary trees",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "102--127",
)

@ARTICLE( Gol82,
  author = "R. N. Goldberg",
  title = "Minimal string difference encodings",
  journal = jalgo,
  volume = 3,
  number = 2,
  year = 1982,
  pages = "147--156",
)

@INPROCEEDINGS( GGPS96,
  author = "L. A. Goldberg and P. W. Goldberg and C. A. Phillip and G. B. Sorkin",
  title = "Constructing Computer Virus Phylogenies",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  series = lncs,
  number = 1075,
  publisher = svb,
  year = 1996,
  pages = "253--270",
)

@ARTICLE( GZ94,
  author = "T. Goldberg and U. Zwick",
  title = "Faster parallel string matching via larger deterministic samples",
  journal = jalgo,
  volume = 16,
  number = 2,
  year = 1994,
  pages = "295--308",
)

@ARTICLE( Gol95,
  author = "M. Goldwurm",
  title = "Random generation of words in an algebraic language in linear binary space",
  journal = ipl,
  volume = 54,
  number = 4,
  year = 1995,
  pages = "229--233",
)

@INPROCEEDINGS( GM90,
  author = "J. Golic and M. Mihaljevic",
  title = "A noisy clock-controlled shift register cryptanalysis concept based on sequence comparison approach",
  booktitle = proct#"7th EUROCRYPT",
  address = aarhus,
  editor = "I. Damgard",
  series = lncs,
  number = 473,
  publisher = svb,
  year = 1990,
  pages = "487--491",
)

@INPROCEEDINGS( Gon83,
  author = "G. H. Gonnet",
  title = "Unstructured data bases or very efficient text searching",
  booktitle = proct#"2nd "#pods,
  address = "Atlanta, GA",
  publisher = acmp,
  year = 1983,
  pages = "117--124",
)

@TECHREPORT( Gon87,
  author = "G. H. Gonnet",
  title = "The {PAT} text searching system",
  type = "Report",
  institution = "Department of Computer Science, University of Waterloo, Ontario",
  year = 1987,
)

@TECHREPORT( Gon88,
  author = "G. H. Gonnet",
  title = "Efficient searching of text and pictures",
  type = "Report",
  number = "OED-88-02",
  institution = "University of Waterloo",
  year = 1988,
)

@INPROCEEDINGS( Gon92,
  author = "G. H. Gonnet",
  title = "Efficient two-dimensional searching",
  booktitle = proct#"3rd "#swat,
  address = "Helsinki, Finland",
  editor = "O. Nurmi and E. Ukkonen",
  series = lncs,
  number = 621,
  publisher = svb,
  year = 1992,
  pages = "317",
)

@TECHREPORT( Gon92b,
  author = "G. H. Gonnet",
  title = "A tutorial introduction to Computation Biochemistry using Darwin",
  institution = "Informatik E.T.H., Z{\"u}rich, Switzerland",
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@ARTICLE( GBY90,
  author = "G. H. Gonnet and R. A. Baeza-Yates",
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@BOOK( GBY91,
  author = "G. H. Gonnet and R. A. Baeza-Yates",
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@INBOOK( GBY91b,
  author = "G. H. Gonnet and R. A. Baeza-Yates",
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@INCOLLECTION( GBS92,
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@TECHREPORT( GCB91,
  author = "G. H. Gonnet and M. Cohen and S. Benner",
  title = "The all-against-all matching of a major protein sequence data base: reliable parameters for aligning sequences and scoring gaps",
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@INPROCEEDINGS( GT87,
  author = "G. H. Gonnet and F. W. Tompa",
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@TECHREPORT( GB88,
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@ARTICLE( GHW86,
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@INCOLLECTION( Gro93,
  author = "M. Gross",
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@BOOK( GP89c,
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@ARTICLE( Gro92,
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@ARTICLE( Gro93b,
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@ARTICLE( GL89,
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@INPROCEEDINGS( GFB94,
  author = "M. Gu and M. Farach and R. Beigel",
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@ARTICLE( GPS99,
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@INPROCEEDINGS( GV92,
  author = "A. Gu{\'e}noche and P. Vitte",
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@INCOLLECTION( Gui85,
  author = "L. Guibas",
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@INPROCEEDINGS( GO77,
  author = "L. J. Guibas and A. M. Odlyzko",
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  booktitle = proct#"18th "#focs,
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@ARTICLE( GO80,
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@ARTICLE( GO81,
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@ARTICLE( GO81b,
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@TECHREPORT( GM96,
  author = "K. Guimar{\~a}es and J. Melo",
  title = "String alignment and approximate matching",
  type = "Report",
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  institution = "Departamento de Inform{\'a}tica, Universidade Federal de Pernambuco, Recife, Brazil",
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@INPROCEEDINGS( GM96b,
  author = "K. Guimar{\~a}es and J. Melo",
  title = "String alignment and approximate matching",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "85--100",
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@INPROCEEDINGS( GKS95,
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  institution = "Computer Science Division, University of California, Davis",
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@ARTICLE( Gus93,
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@BOOK( Gus97,
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@INPROCEEDINGS( GBN92,
  author = "D. Gusfield and K. Balasubramanian and D. Naor",
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@ARTICLE( GBN94,
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@ARTICLE( GLS92,
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@INPROCEEDINGS( GKWS96,
  author = "D. Gusfield and R. M. Karp and L. Wang and P. Stelling",
  title = "Graph Traversals, Genes, and Matroids: An Efficient Case of the Travelling Salesman Problem",
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@INPROCEEDINGS( Gut98,
  author = "C. Guti{\'e}rrez",
  title = "Solving Equations in Strings: On {Makanin}'s Algorithm",
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@ARTICLE( Gwa94,
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  pages = "1261--1268",
  note = "In Korean",
)

% HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

@TECHREPORT( Hag93,
  author = "T. Hagerup",
  title = "Optimal Parallel String Algorithms: Sorting, Merging and Computing the Minimum",
  type = "Report",
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  institution = "Max-Planck-Institut f{\"u}r Mathematik, Universit{\"a}t Saarbr{\"u}cken",
  year = 1993,
)

@INPROCEEDINGS( Hag94,
  author = "T. Hagerup",
  title = "Optimal Parallel String Algorithms: Merging, Sorting and Computing the Minimum",
  booktitle = proct#"26th "#stoc,
  address = montreal,
  publisher = acmp,
  year = 1994,
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@INPROCEEDINGS( Hai92,
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@UNPUBLISHED( HKR96,
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@MASTERSTHESIS( Han90,
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@TECHREPORT( Han91,
  author = "C. Hancart",
  title = "Algorithme de {Morris} et {Pratt} et ses raffinements : une analyse en moyenne",
  type = "Rapport",
  number = "LITP 91.56",
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  year = 1991,
)

@INPROCEEDINGS( Han91b,
  author = "C. Hancart",
  title = "Une analyse en moyenne de l'algorithme de {Morris} et {Pratt} et de ses raffinements",
  booktitle = "Actes des 2e Journ{\'e}es franco-belges: Th{\'e}ories des Automates et Applications",
  address = "Rouen, France",
  editor = "D. Krob",
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  year = 1991,
  pages = "99--110",
)

@PHDTHESIS( Han93,
  author = "C. Hancart",
  title = "Analyse exacte et en moyenne d'algorithmes de recherche d'un motif dans un texte",
  type = "Th{\`e}se de doctorat",
  school = "Universit{\'e} Paris 7",
  year = 1993,
)

@TECHREPORT( Han93b,
  author = "C. Hancart",
  title = "Analyse exacte et en moyenne d'algorithmes de recherche d'un motif dans un texte",
  type = "Rapport",
  number = "93-11",
  institution = "IGM, Universit{\'e} de Marne-la-Vall{\'e}e, France",
  year = 1993,
)

@ARTICLE( Han93c,
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@ARTICLE( Han94,
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@INPROCEEDINGS( HCG95,
  author = "L. Hanks and R. K. Cytron and W. Gillett",
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  year = 1995,
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@INPROCEEDINGS( Han95,
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  booktitle = proct#"6th "#cpm,
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  publisher = svb,
  year = 1995,
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@ARTICLE( HP88,
  author = "S. Hannenhalli and P. A. Pevzner",
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@ARTICLE( HT84,
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@INPROCEEDINGS( Har94,
  author = "R. Hariharan",
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  year = 1994,
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@ARTICLE( Har97,
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@ARTICLE( Har71,
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@INPROCEEDINGS( HI96,
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  publisher = svb,
  year = 1996,
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@INCOLLECTION( HR85,
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@ARTICLE( HY92b,
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@INPROCEEDINGS( Has80,
  author = "R. L. Haskins",
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@ARTICLE( Has81,
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@INPROCEEDINGS( HC86,
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@PHDTHESIS( Hat73,
  author = "J. P. Haton",
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  type = "Th{\`e}se de Doctorat d'{\'e}tat",
  school = "Universit{\'e} de Nancy, France",
  year = 1973,
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@INPROCEEDINGS( HL94,
  author = "G. Havas and J.-X. Lian",
  title = "A New Problem in String Searching",
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  author = "J. Holub",
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@TECHREPORT( Hol98a,
  author = "J. Holub",
  title = "Simulation of Nondeterministic Finite Automata in Approximate String and Sequence Matching",
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  institution = "Department of Computer Science and Engineering, Czech Technical University, Prague, Czech Republic",
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@INPROCEEDINGS( Hol98b,
  author = "J. Holub",
  title = "Dynamic programming for reduced {NFAs} for approximate string and sequence matching",
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@INPROCEEDINGS( HIMM99,
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@INPROCEEDINGS( Hui92,
  author = "L. C. K. Hui",
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@ARTICLE( HS91,
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@INPROCEEDINGS( HL98,
  author = "T. Hwa and M. L{\"a}ssig",
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  pages = "109--116",
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% IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

@ARTICLE( IJW92,
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@ARTICLE( IPS90,
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@INPROCEEDINGS( IS92,
  author = "R. M. Idury and A. A. Sch{\"a}ffer",
  title = "Dynamic dictionary matching with failure functions",
  booktitle = proct#"3rd "#cpm,
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  year = 1992,
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@INPROCEEDINGS( IS93,
  author = "R. M. Idury and A. A. Sch{\"a}ffer",
  title = "Multiple matching of rectangular patterns",
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@ARTICLE( IS94,
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  pages = "295--310",
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@INPROCEEDINGS( IS94b,
  author = "R. M. Idury and A. A. Sch{\"a}ffer",
  title = "Multiple matching of parameterized patterns",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  series = lncs,
  number = 807,
  publisher = svb,
  year = 1994,
  pages = "226--239",
)

@ARTICLE( IS95,
  author = "R. M. Idury and A. A. Sch{\"a}ffer",
  title = "Multiple matching of rectangular patterns",
  journal = infcomp,
  volume = 117,
  number = 1,
  year = 1995,
  pages = "78--90",
)

@ARTICLE( IS96,
  author = "R. M. Idury and A. A. Sch{\"a}ffer",
  title = "Multiple matching of parameterized patterns",
  journal = tcs,
  volume = 154,
  number = 2,
  year = 1996,
  pages = "203--224"
)

@TECHREPORT( IKMV98,
  author = "C. S. Iliopoulos and M. Kumar and L. Mouchard and S. Venkatesh",
  title = "Computing all motif occurrences in polyphonic musical sequences",
  number = "9-98",
  institution = "School of Computing, Curtin University, Australia",
  year = 1998,
)

@INPROCEEDINGS( IKMV2000,
  author = "C. S. Iliopoulos and M. Kumar and L. Mouchard and S. Venkatesh",
  title = "Motif evolution in polyphonic musical sequences",
  booktitle = proct#"11th "#awoca,
  address = hunter,
  editor = "L. Brankovic and J. Ryan",
  year = 2000,
  pages = "53--66",
)

@INPROCEEDINGS( ILMP2000,
  author = "C. S. Iliopoulos and T. Lecroq and L. Mouchard and Y. J. Pinzon",
  title = "Computing Repetitions in Musical Sequences",
  booktitle = proct#pscw#"~'2000, Bratislava, Slovakia",
  address = ctu,
  editor = "M. Bal{\'i}k and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--2000--03",
  year = 2000,
  pages = "49--59",
)

@ARTICLE( ILMP2003,
  author = "C. S. Iliopoulos and T. Lecroq and L. Mouchard and Y. J. Pinzon",
  title = "Computing Approximate Repetitions in Musical Sequences",
  journal = ijcommat,
  volume = 83,
  number = "1/2",
  year = "",
  pages = "",
  note = "To appear",
)

@INPROCEEDINGS( IMP93,
  author = "C. S. Iliopoulos and D. W. G. Moore and K. Park",
  title = "Covering a string",
  booktitle = proct#"4th "#cpm,
  address = padova,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 684,
  publisher = svb,
  year = 1993,
  pages = "54--62",
)

@INPROCEEDINGS( IMS96,
  author = "C. S. Iliopoulos and D. W. G. Moore and W. F. Smyth",
  title = "A linear algorithm for computing the squares of a {fibonacci} string",
  booktitle = proct#"Computing: Australian Theory Symposium",
  address = "Melbourne, Australia",
  editor = "P. Eades and M. Moule",
  year = 1996,
  pages = "55--63",
)

@ARTICLE( IMS97,
  author = "C. S. Iliopoulos and D. Moore and W. F. Smyth",
  title = "A characterization of the squares in a {Fibonacci} string",
  journal = tcs,
  volume = 172,
  number = "1--2",
  year = 1997,
  pages = "281--291",
)

@INPROCEEDINGS( IM99,
  author = "C. S. Iliopoulos and L. Mouchard",
  title = "An $O(n\log n)$ Algorithm for Computing all Maximal Quasiperiodicities in Strings",
  booktitle = "Combinatorics, Computation and Logic. Proceedings of DMTCS'99 and CATS'99",
  editor = "C. S. Calude and M. J. Dinneen",
  series = lncs,
  pages = "262--272",
  year = 1999,
  publisher = svs,
  address = "Auckland, New-Zealand",
)

@ARTICLE( IM99b,
  author = "C. S. Iliopoulos and L. Mouchard",
  title = "Quasiperiodicity and string covering",
  journal = tcs,
  volume = 218,
  number = 1,
  year = 1999,
  pages = "205--216",
)

@ARTICLE( IM99c,
  author = "C. S. Iliopoulos and L. Mouchard",
  title = "Quasiperiodicity: From detection to normal forms",
  journal = jalc,
  volume = 4,
  number = 3,
  year = 1999,
  pages = "213--228",
)

@TECHREPORT( IMV98,
  author = "C. S. Iliopoulos and L. Mouchard and S. Venkatesh",
  title = "Optimal computation of all the repetitions in a string",
  number = "8-98",
  institution = "School of Computing, Curtin University, Australia",
  year = 1998,
)

@INPROCEEDINGS( IP2001,
  author = "C. S. Iliopoulos and Y. J. Pinzon",
  title = "Recovering an {LCS} in $O(n^2/w)$ time and space",
  booktitle = proct#"12th "#awoca,
  address = "Bandung, Indonesia",
  editor = "E. Tri Baskoro",
  year = 2001,
  pages = "80--87",
)

@ARTICLE( IS92b,
  author = "C. S. Iliopoulos and W. F. Smyth",
  title = "Optimal algorithms for computing the canonical form of a circular string",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "87--105",
)

@ARTICLE( IP94,
  author = "C. S. Iliopoulos and K. Park",
  title = " An optimal $O(\log\log n)$-time algorithm for parallel superprimitivity testing",
  journal = jkiss,
  volume = 21,
  number = 8,
  year = 1994,
  pages = "1400--1404",
)

@ARTICLE( IP96,
  author = "C. S. Iliopoulos and K. Park",
  title = "A work-time optimal algorithm for computing all string covers",
  journal = tcs,
  volume = 164,
  number = "1--2",
  year = 1996,
  pages = "299--310",
)

@INPROCEEDINGS( IR97,
  author = "C. S. Iliopoulos and J. F. Reid",
  title = "An optimal parallel algorithm for analysing occluded images",
  booktitle = proct#"4th Annual Australian Conference on Parallel and Real-Time Systems",
  address = "Newcastle, Australia",
  editor = "N. Sharda and A. Tam",
  publisher = svb,
  year = 1997,
  pages = "104--113",
)

@INPROCEEDINGS( IR98,
  author = "C. S. Iliopoulos and J. F. Reid",
  title = "Validating and decomposing partially occluded two-dimensional images",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "83--94",
)

@INPROCEEDINGS( IS97a,
  author = "C. S. Iliopoulos and J. Simpson",
  title = "On-line validation and analysis of occluded images",
  booktitle = proct#"8th "#awoca,
  address = "Queensland University of Technology, Australia",
  editor = "V. Estivill-Castro",
  year = 1997,
  pages = "25--36",
)

@ARTICLE( IS97b,
  author = "C. S. Iliopoulos and W. F. Smyth",
  title = "A characterization of the squares in a {Fibonacci} string",
  journal = tcs,
  volume = 172,
  number = "1--2",
  year = 1997,
  pages = "281--291",
)

@INPROCEEDINGS( IS98,
  author = "C. S. Iliopoulos and W. F. Smyth",
  title = "On-line algorithms for $k$-covering",
  booktitle = proct#"9th "#awoca,
  address = perth,
  editor = "C. S. Iliopoulos",
  year = 1998,
  pages = "97--106",
)

@INPROCEEDINGS( II95,
  author = "H. Imai and T. Ikeda",
  title = "{$k-$Group Multiple Alignment Based on A$^*$ Search}",
  booktitle = proct#"6th Genome Inform. Workshop",
  year = 1995,
  pages = "9--18",
)

@INPROCEEDINGS( Ind97,
  author = "P. Indyk",
  title = "Deterministic superimposed coding with applications to pattern matching",
  booktitle = proct#"38th "#focs,
  publisher = ieeecsp,
  year = 1997,
  pages = "127--136",
)

@INPROCEEDINGS( Ind98,
  author = "P. Indyk",
  title = "Faster algorithms for string matching problems: matching the convolution bound",
  booktitle = proct#"39th "#focs,
  publisher = ieeecsp,
  year = 1998,
  pages = "166--173",
)

@INPROCEEDINGS( IT92,
  author = "K. Inoue and I. Takanami",
  title = "A characterization of recognizable picture languages",
  booktitle = proct#"2nd International Colloquium on Parallel Image Analysis",
  address = "Ube, Japan",
  editor = "A. Nakamura and M. Nivat and A. Saoudi and P.S.P. Wang and K. Inoue",
  series = lncs,
  number = 654,
  publisher = svb,
  year = 1992,
  pages = "133--143",
)

@TECHREPORT( Irv96,
  author = "R. W. Irving",
  title = "Suffix binary search trees",
  institution = "University of Glasgow, Computing Science Department",
  year = 1996,
)

@INPROCEEDINGS( IF92,
  author = "R. W. Irving and C. B. Fraser",
  title = "Two algorithms for the longest common subsequence of three (or more) strings",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "214--229",
)

@INPROCEEDINGS( IF93,
  author = "R. W. Irving and C. B. Fraser",
  title = "On the worst-case behaviour of some approximation algorithms for the shortest common supersequence of {$k$} strings",
  booktitle = proct#"4th "#cpm,
  address = padova,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 684,
  publisher = svb,
  year = 1993,
  pages = "63--73",
)

@INPROCEEDINGS( IF94,
  author = "R. W. Irving and C. B. Fraser",
  title = "Maximal Common Subsequences and Minimal Common Supersequences",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "173--183",
)

@ARTICLE( IS90,
  author = "M. E. Isenman and D. E. Shasha",
  title = "Performance and Architectural Issues for String Matching",
  journal = ieeetc,
  volume = 39,
  number = 2,
  year = 1990,
  pages = "238--250",
)

@ARTICLE( Ita76,
  author = "A. Itai",
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  journal = sicomp,
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  year = 1976,
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@ARTICLE( ISHY88,
  author = "K. Itano and Y. Sato and H. Hirai and T. Yamagata",
  title = "An Incremental Pattern Matching Algorithm for the Pipelined Lexical Scanner",
  journal = ipl,
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  number = 5,
  year = 1988,
  pages = "253--258",
)

@ARTICLE( IK83,
  author = "T. Ito and M. Kizawa",
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  journal = acmds,
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@ARTICLE( IKSY88,
  author = "M. Ito and M. Katsura and H. J. Shyr and S. S. Yu",
  title = "Automata accepting primitive words",
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  volume = 37,
  year = 1988,
  pages = "45--50",
)

@INPROCEEDINGS( ISNH94,
  author = "M. Ito and K. Shimizu and M. Nakanishi and A. Hashimoto",
  title = "Polynomial-Time Algorithms for Computing Characteristic Strings",
  editor = "M. Crochemore and D. Gusfield",
  address = asilo,
  booktitle = proct#"5th "#cpm,
  number = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "274--288",
)

@ARTICLE( IS99,
  author = "Ito and Shizuya",
  title = "On the Difficulty of Searching for a String without Decryption",
  journal = "TIEICE: IEICE Transactions on Communications/Electronics/Information and Systems",
  year = 1999,
  pages = "?--?",
)

@ARTICLE( Ito81,
  author = "S. Y. Itoga",
  title = "The string merging problem",
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  volume = 21,
  year = 1981,
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@ARTICLE( Iva84,
  author = "A. G. Ivanov",
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  volume = 48,
  year = 1984,
  pages = "520--568",
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@ARTICLE( IA80,
  author = "S. Iyenger and V. Alia",
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  journal = amcomp,
  volume = 6,
  year = 1980,
  pages = "123--131",
)

% JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ

@INPROCEEDINGS( JV92,
  author = "G. Jacobson and K.-P. Vo",
  title = "Heaviest increasing/common subsequence",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "52--66",
)

@TECHREPORT( JRS92,
  author = "P. Jacquet and B. Rais and W. Szpankowski",
  title = "Compact suffix trees ressemble PATRICIA trees: limiting distribution of depth",
  type = "Report",
  number = "CSD-TR-92-048",
  institution = "Purdue University",
  year = 1992,
)

@TECHREPORT( JS89,
  author = "P. Jacquet and W. Szpankowski",
  title = "Autocorrelation on words and its applications. Analysis of suffix tree by string-ruler approach",
  type = "Rapport",
  number = "TR-1106",
  institution = "INRIA",
  year = 1989,
)

@INPROCEEDINGS( JS91,
  author = "P. Jacquet and W. Szpankowski",
  title = "What can we learn about suffix trees from independent tries ?",
  booktitle = proct#"2nd "#wads,
  address = "Ottawa, Canada",
  editor = "F. Dehne and J.-R. Sack and N. Santoro",
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  publisher = svb,
  year = 1991,
  pages = "228--239",
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@BOOK( Jaj92,
  author = "J. J{\'a}j{\'a}",
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  publisher = aw,
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@ARTICLE( JRV96,
  author = "J. J{\'a}j{\'a} and K.W. Ryu and U. Vishkin",
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  volume = 154,
  number = 2,
  year = 1996,
  pages = "225--245"
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@INPROCEEDINGS( Jan84,
  author = "K. Jantke",
  title = "Polynomial time inference of general pattern languages",
  booktitle = proct#"1st "#stacs,
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  editor = "M. Fontet and K. Mehlhorn",
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  number = 166,
  publisher = svb,
  year = 1984,
  pages = "314--325",
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@INPROCEEDINGS( JJB96,
  author = "T. Jiang and Z. Jiang and D. Breslauer",
  title = "Rotation of periodic strings and short superstrings",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "115--125",
)

@TECHREPORT( JL91,
  author = "T. Jiang and M. Li",
  title = "Towards a {DNA} sequencing theory (learning a string)",
  type = "Report",
  number = "91-08",
  institution = "Computer Science Department, McMaster University Hamilton, Ontario",
  year = 1991,
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@ARTICLE( JL93,
  author = "T. Jiang and M. Li",
  title = "On the complexity of learning strings and sequences",
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  volume = 119,
  number = 2,
  year = 1993,
  pages = "363--373",
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@INPROCEEDINGS( JL93b,
  author = "T. Jiang and M. Li",
  title = "Approximating Shortest Superstrings with Constraints",
  booktitle = proct#"3rd "#wads,
  address = montreal,
  editor = "F. Dehne and J.-R. Sack and N. Santoro and S. Whitesides",
  series = lncs,
  number = 709,
  publisher = svb,
  year = 1993,
  pages = "385--396",
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@INPROCEEDINGS( JL93c,
  author = "T. Jiang and M. Li",
  title = "{$k$} One-way Heads Cannot Do String Matching",
  booktitle = proct#"25th "#stoc,
  address = "San Diego, CA",
  publisher = acmp,
  year = 1993,
  pages = "62--70",
)

@INPROCEEDINGS( JL94,
  author = "T. Jiang and M. Li",
  title = "On the approximation of shortest common supersequences and longest common subsequences",
  booktitle = proct#"21st "#icalp,
  address = "Jerusalem, Israel",
  editor = "S. Abiteboul and E. Shamir",
  series = lncs,
  number = 820,
  publisher = svb,
  year = 1994,
  pages = "191--202",
)


@ARTICLE( JL95,
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  pages = "473--491",
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@ARTICLE( JL95b,
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@ARTICLE( JLD92,
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@INPROCEEDINGS( JLMZ2000,
  author = "T. Jiang and G.-H. Lin and B. Ma and K. Zhang",
  title = "The Longest Common Subsequence Problem for Arc-Annotated Sequences",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
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  year = 2000,
  pages = "154--165",
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@INPROCEEDINGS( JSSS93,
  author = "T. Jiang and A. Salomaa and K. Salomaa and Y. Sheng",
  title = "Inclusion is undecidable for pattern languages",
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  year = 1993,
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@INPROCEEDINGS( JWZ94,
  author = "T. Jiang and L. Wang and K. Zhang",
  title = "Alignment of Trees: an Alternative to Tree Edit",
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  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "75--86",
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@INPROCEEDINGS( JLW94,
  author = "T. Jiang and E. L. Lawler and L. Wang",
  title = "Aligning Sequences via an Evolutionary Tree: complexity and Approximation",
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  year = 1994,
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@TECHREPORT( Joh94,
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@ARTICLE( Joh95,
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@ARTICLE( JD86,
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@INPROCEEDINGS( JSHR96,
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  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
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  year = 1996,
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@TECHREPORT( JTU91,
  author = "P. Jokinen and J. Tarhio and E. Ukkonen",
  title = "A comparison of approximate string matching algorithms",
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@ARTICLE( JTU96,
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  year = 1996,
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@INPROCEEDINGS( JU91,
  author = "P. Jokinen and E. Ukkonen",
  title = "Two algorithms for approximate string matching in static texts",
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@ARTICLE( Jon77,
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@ARTICLE( JGR89,
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@INPROCEEDINGS( JDV2000,
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  address = ctu,
  editor = "M. Bal{\'i}k and M. {\v S}im{\' a}nek",
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  year = 2000,
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@ARTICLE( JP96,
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  pages = "387--394"
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% KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

@ARTICLE( KMUW96,
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@TECHREPORT( KPR98,
  author = "J. Karhum{\"a}ki and W. Plandowski and W. Rytter",
  title = "On the Complexity of Computing the Order of Repetition of a String",
  institution = "Turku Centre for Computer Science, Finland",
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@ARTICLE( KPR99a,
  author = "J. Karhum{\"a}ki and W. Plandowski and W. Rytter",
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  author = "J. Karhum{\"a}ki and W. Plandowski and W. Rytter",
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@ARTICLE( KPR2000,
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@ARTICLE( KO87,
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@ARTICLE( KO88,
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  title = "An Alphabet-Independent Optimal Parallel Search for Three Dimensional Patterns. ",
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@ARTICLE( KO81,
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@ARTICLE( KLT97,
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  title = "Combinatorial algorithms for {DNA} sequence assembly",
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@ARTICLE( KM95,
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@INPROCEEDINGS( KS94,
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@ARTICLE( KS95,
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@ARTICLE( KLP96,
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@INPROCEEDINGS( KTSA99,
  author = "T. Kida and M. Takeda and A. Shinohara and S. Arikawa",
  title = "{Shift-And} Approach to Pattern Matching in {LZW} Compressed Text",
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@ARTICLE( KTSMA2000,
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@PHDTHESIS( Kil92,
  author = "P. Kilpel{\"a}inen",
  title = "Tree Matching Problems with Applications to Structured Text Databases",
  school = "University of Helsinki, Finland",
  type = "Ph. D. Thesis",
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@INPROCEEDINGS( KM91,
  author = "P. Kilpel{\"a}inen and H. Mannila",
  title = "The tree inclusion problem",
  booktitle = proct#"International Joint Conference on Theory and Practice of Software Development",
  address = "Brighton, U.K.",
  editor = "S. Abramsky and T. S. E. Maibaum",
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  year = 1991,
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@INPROCEEDINGS( KM92b,
  author = "P. Kilpel{\"a}inen and H. Mannila",
  title = "Grammatical tree matching",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
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  number = 644,
  publisher = svb,
  year = 1992,
  pages = "162--174",
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@INPROCEEDINGS( KM94,
  author = "P. Kilpel{\"a}inen and H. Mannila",
  title = "Query Primitive for Tree-Structured Data",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
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  number = 807,
  publisher = svb,
  year = 1994,
  pages = "213--225",
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@INPROCEEDINGS( KKP98,
  author = "D. K. Kim and Y. A. Kim and K. Park",
  title = "Constructing Suffix Arrays for Multi-Dimensional Matrices",
  booktitle = proct#"9th "#cpm,
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  editor = "M. Farach-Colton",
  series = lncs,
  number = 1448,
  publisher = svb,
  year = 1998,
  pages = "126--139",
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@ARTICLE( KLPC99,
  author = "D. K. Kim and J. S. Lee and K. Park and Y. Cho",
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@TECHREPORT( KST91,
  author = "J.-Y. Kim and J. Shawe-Taylor",
  title = "Fast expected string matching using an {$n$}-gram algorithm",
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  number = "CSD-TR-91-16",
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  year = 1991,
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@ARTICLE( KST92,
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  number = 1,
  year = 1992,
  pages = "107--117",
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@INPROCEEDINGS( KST92b,
  author = "J.-Y. Kim and J. Shawe-Taylor",
  title = "Fast multiple keyword searching",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "41--51",
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@INPROCEEDINGS( KST93,
  author = "J.-Y. Kim and J. Shawe-Taylor",
  title = "Fast expected two dimensional pattern matching",
  booktitle = proct#"1st "#wsp,
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  year = 1993,
  pages = "77--92",
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@ARTICLE( KST94,
  author = "J.-Y. Kim and J. Shawe-Taylor",
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@INPROCEEDINGS( KP2000,
  author = "S.-R. Kim and K. Park",
  title = "A Dynamic Edit Distance Table",
  booktitle = proct#"11th "#cpm,
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  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "60--68",
)

@ARTICLE( Kim88,
  author = "R. E. Kimbrell",
  title = "Searching for text? Send an {$N$}-gram!",
  journal = byte,
  volume = 13,
  number = 5,
  year = 1988,
  pages = "297--312",
)

@INPROCEEDINGS( KNRNZ97,
  author = "J.P. Kitajima and G. Navarro and B. Ribeiro-Neto and N. Ziviani",
  title = "Distributed Generation of Suffix Arrays: A Quicksort Based Approach",
  booktitle = proct#"4th "#wsp,
  address = "Valparaiso, Chile",
  editor = "R. Baeza-Yates",
  publisher = cup,
  year = 1997,
  pages = "53--69",
)

@ARTICLE( KOE85,
  author = "Y. Kitazume and E. Ohira and T. Endo",
  title = "{LSI} Implementation of a Pattern Matching Algorithm for Speech Recognition",
  journal = ieeeassp,
  volume = 33,
  number = 1,
  year = 1985,
  pages = 1,
)

@TECHREPORT( KK88,
  author = "M. M. Klawe and D. J. Kleitman",
  title = "An almost linear time algorithm for generalized matrix searching",
  type = "Report",
  institution = "IBM Almaden Research Center",
  year = 1988,
)

@INPROCEEDINGS( Kle98,
  author = "P. Klein",
  title = "Computing the Edit-Distance between Unrooted Ordered Trees",
  booktitle = proct#"6th "#esa,
  address = "Venice, Italy",
  editor = "G. Bilardi and G. F. Italiano and A. Pietracaprina and G. Pu cci",
  series = lncs,
  number = 1461,
  publisher = svb,
  year = 1998,
  pages = "91--102",
)

@INPROCEEDINGS( Kle97,
  author = "S. T. Klein",
  title = "Space- and time-efficient decoding with canonical {Huffman} trees",
  booktitle = proct#"8th "#cpm,
  address = aarhus,
  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  publisher = svb,
  year = 1997,
  pages = "65--75",
)

@INPROCEEDINGS( Kle2000,
  author = "S. T. Klein",
  title = "Improving Static Compression Schemes by Alphabet Extension",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "210--221",
)

@INPROCEEDINGS( Kne95,
  author = "L. Knecht",
  title = "Pairwise alignment with scoring on tuples",
  booktitle = proct#"6th "#cpm,
  address = espoo,
  editor = "Z. Galil and E. Ukkonen",
  series = lncs,
  number = 937,
  publisher = svb,
  year = 1995,
  pages = "215--229",
)

@INPROCEEDINGS( KM92c,
  author = "J. R. Knight and E. W. Myers",
  title = "Approximate regular expression pattern matching with concave gap penalties",
  booktitle = proct#"3rd "#cpm,
  address = tucson,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 664,
  publisher = svb,
  year = 1992,
  pages = "67--78",
)

@TECHREPORT( KM92d,
  author = "J. R. Knight and E. W. Myers",
  title = "Approximate regular expression pattern matching with concave gap penalties",
  type = "Report",
  number = "92-12",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1992,
)

@TECHREPORT( KM92e,
  author = "J. R. Knight and E. W. Myers",
  title = "Super-pattern Matching",
  type = "Report",
  number = 29,
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1992,
)

@ARTICLE( KM95a,
  author = "J. R. Knight and E. W. Myers",
  title = "Super-pattern Matching",
  journal = algo,
  volume = 13,
  number = "1/2",
  year = 1995,
  pages = "211--243",
)

@ARTICLE( KM95b,
  author = "J. R. Knight and E. W. Myers",
  title = "Approximate regular expression pattern matching with concave gap penalties",
  journal = algo,
  volume = 14,
  number = 1,
  year = 1995,
  pages = "85--121",
)

@BOOK( Knu73,
  author = "D. E. Knuth",
  title = "The art of computer programming: fundamental algorithms",
  volume = 1,
  publisher = aw,
  address = read,
  year = 1973,
)

@BOOK( Knu73b,
  author = "D. E. Knuth",
  title = "The art of computer programming: seminumerical algorithms",
  volume = 2,
  publisher = aw,
  address = read,
  year = 1973,
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@BOOK( Knu73c,
  author = "D. E. Knuth",
  title = "The art of computer programming: Sorting and searching",
  volume = 3,
  publisher = aw,
  address = read,
  year = 1973,
)

@ARTICLE( Knu85,
  author = "D. E. Knuth",
  title = "Dynamic Huffman coding",
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  volume = 6,
  number = 2,
  year = 1985,
  pages = "163--180",
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@ARTICLE( KMP77,
  author = "D. E. Knuth and Morris, Jr, J. H. and V. R. Pratt",
  title = "Fast pattern matching in strings",
  journal = sicomp,
  volume = 6,
  number = 1,
  year = 1977,
  pages = "323--350",
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@ARTICLE( KP81,
  author = "D. E. Knuth and M. F. Plass",
  title = "Breaking paragraphs into lines",
  journal = spe,
  volume = 11,
  number = 11,
  year = 1981,
  pages = "1119-1184",
)

@TECHREPORT( KP71,
  author = "D. E. Knuth and V. R. Pratt",
  title = "Automata theory can be useful",
  type = "Report",
  institution = "Stanford University",
  year = 1971,
)

@ARTICLE( KH87,
  author = "K. I. Ko and C. M. Hua",
  title = "A note on the two variable pattern finding problem",
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  volume = 34,
  number = 1,
  year = 1987,
  pages = "75--86",
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@INPROCEEDINGS( KR78,
  author = "T. Kohonen and E. Reuhkala",
  title = "A very fast associative method for the recognition and correction of misspelt words, based on redundant hash-addressing",
  booktitle = proct#"4th Joint Conference on Pattern Recognition",
  address = "Kyoto, Japan",
  year = 1978,
  pages = "807--809",
)

@TECHREPORT( KK98,
  author = "R. Kolpakov and G. Kucherov",
  title = "Maximal Repetitions in Words or How to Find all Squares in Linear Time",
  type = "Report",
  number = "LORIA 98-R-227",
  institution = "Laboratoire Lorrain de Recherche en Informatique et ses Applications",
  year = 1998,
)

@TECHREPORT( KK99,
  author = "R. Kolpakov and G. Kucherov",
  title = "On the sum of exponents of maximal repetitions in a word",
  type = "Report",
  number = "LORIA 99-R-034",
  institution = "Laboratoire Lorrain de Recherche en Informatique et ses Applications",
  year = 1999,
)

@INPROCEEDINGS( KK99b,
  author = "R. Kolpakov and G. Kucherov",
  title = "On Maximal Repetitions in Words",
  booktitle = "Proceedings of the 12th International Symposium on Fundamentals of Computation Theory",
  address = "Iasi, Romania",
  editor = "G. Ciobanu and Gh. P{\v a}un",
  series = lncs,
  volume = 1684,
  publisher = svb,
  year = 1999,
  pages = "374--385",
)

@INPROCEEDINGS( KK99c,
  author = "R. Kolpakov and G. Kucherov",
  title = "Finding Maximal Repetitions in a Word in Linear Time",
  booktitle = proct#"40th "#focs,
  address = "New York",
  publisher = ieeecsp,
  year = 1999,
  pages = "596--604",
)

@ARTICLE( KK2000,
  author = "R. Kolpakov and G. Kucherov",
  title = "On Maximal Repetitions in Words",
  journal = jda,
  volume = 1,
  number = 1,
  year = 2000,
  pages = "159--186",
)

@INPROCEEDINGS( KGT98,
  author = "R. Kolpakov and G. Kucherov and Y. Tarannikov",
  title = "On Repetition-Free Binary Words of Minimal Density",
  booktitle = proct#"23rd"#mfcs,
  address = "Brno, Czech Republic",
  editor = "L. Brim and J. Gruska and J. Zlatuska",
  series = lncs,
  number = 1450,
  publisher = svb,
  year = 1998,
  pages = "683--692",
)

@ARTICLE( KKT99,
  author = "R. Kolpakov and G. Kucherov and Y. Tarannikov",
  title = "On repetition-free binary words of minimal density",
  journal = tcs,
  volume = 218,
  number = 1,
  year = 1999,
  pages = "161--175",
)

@INPROCEEDINGS( KW97,
  author = "G. A. Komatsoulis and M. S. Waterman",
  title = "Chimeric Alignment by Dynamic Programming: Algorithm and Biological Uses",
  booktitle = proct#"1st "#recomb,
  address = "Santa Fe, NM",
  publisher = acmp,
  year = 1997,
  pages = "174--180",
)

@INPROCEEDINGS( KS96,
  author = "I. Kontoyiannis and Y. M. Suhov",
  title = "Stationary Entrophy Estimation via String Matching",
  booktitle = proct#"6th "#dcc,
  address = "Snowbird, UT",
  editor = "J. A. Storer and M. Cohn",
  publisher = ieeecsp,
  year = 1996,
  pages = "444",
)

@INPROCEEDINGS( KV91,
  author = "D. G. Korn and K.-P. Vo",
  title = "{SFIO}: Safe/Fast String/File {IO}",
  booktitle = proc#"Summer USENIX Conference",
  address = "Nashville, TN",
  year = 1991,
  pages = "235--256",
)

@INPROCEEDINGS( Kos81,
  author = "S. R. Kosaraju",
  title = "Localized Search in Sorted Lists",
  booktitle = proct#"13th "#stoc,
  address = "Milwaukee, Wisconsin",
  year = 1981,
  pages = "62--69",
)

@INPROCEEDINGS( Kos94,
  author = "S. R. Kosaraju",
  title = "Computation of Squares in String",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  pages = "146--150",
  year = 1994,
)

@INPROCEEDINGS( Kos94b,
  author = "S. R. Kosaraju",
  title = "Real-Time Pattern Matching and Quasi-Real-Time Construction of Suffix Tree",
  booktitle = proct#"26th "#stoc,
  address = montreal,
  publisher = acmp,
  year = 1994,
  pages = "310--316",
)

@INPROCEEDINGS( KD95,
  author = "S. R. Kosaraju and A. L. Delcher",
  title = "Large-Scale Assembly of {DNA} Strings and Space-Efficient Construction of Suffix Trees",
  booktitle = proct#"27th "#stoc,
  address = "Las Vegas, Nevada",
  year = 1995,
  pages = "169--177",
)

@INPROCEEDINGS( KD96,
  title = "Correction: {L}arge-Scale Assembly of {DNA} Strings and Space-Efficient Construction of Suffix Trees",
  author = "S. R. Kosaraju and A. L. Delcher",
  booktitle = proct#"28th "#stoc,
  address = "Philadelphia, Pennsylvania",
  year = 1996,
  pages = 659,
)

@INPROCEEDINGS( KPS94,
  author = "S. R. Kosaraju and J.K. Park and C. Stein",
  title = "Long Tours and Short Superstrings",
  booktitle = proct#"35th "#focs,
  address = "Santa Fe, NM",
  publisher = acmp,
  year = 1994,
  pages = "166--177",
)

@INPROCEEDINGS( KM84,
  author = "G. Kowalski and A. Meltzer",
  title = "New multi-term high speed text search algorithms",
  booktitle = proct#"1st IEEE Conference on Computer Applications",
  year = 1984,
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@ARTICLE( Kri94,
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  pages = "158--174",
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@ARTICLE( KS87,
  author = "K. Krithivasan and R. Sitalakshmi",
  title = "Efficient two-dimensional pattern matching in the presence of errors",
  journal = infsci,
  volume = 43,
  year = 1987,
  pages = "169--184",
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@ARTICLE( Kro92,
  author = "F.T. Krogh",
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  year = 1992,
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@ARTICLE( Kru83,
  author = "J. B. Kruskal",
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  volume = 25,
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@INPROCEEDINGS( KR95b,
  author = "G. Kucherov and M. Rusinowitch",
  title = "Matching a set of strings with variable length don't cares",
  booktitle = proct#"6th "#cpm,
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  publisher = svb,
  year = 1995,
  pages = "230--247",
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@ARTICLE( Kuk92,
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@ARTICLE( KDK93,
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@TECHREPORT( Kul92,
  author = "D. C. Kulp",
  title = "Very fast pattern matching for highly repetitive text",
  type = "Report",
  institution = "Department of Computer Science, University of Canterbury",
  year = 1992,
)

@ARTICLE( KR87b,
  author = "S. K. Kumar and C. P. Rangan",
  title = "A linear-space algorithm for the {LCS} problem",
  journal = acta,
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@INPROCEEDINGS( KS94b,
  author = "S. Kumar and E. Spafford",
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  year = 1994,
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@ARTICLE( KC89,
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  journal = sigirf,
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@ARTICLE( KC91,
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@INPROCEEDINGS( Kur96,
  author = "S. Kurtz",
  title = "Approximate string searching under weighted edit distance",
  booktitle = proct#"3rd "#wsp,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  publisher = cup,
  year = 1996,
  pages = "156--170",
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@ARTICLE( Kur99,
  author = "S. Kurtz",
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  journal = spe,
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  year = 1999,
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@INPROCEEDINGS( KM97,
  author = "S. Kurtz and G. Myers",
  title = "Estimating the probability of approximate matches",
  booktitle = proct#"8th "#cpm,
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  editor = "A. Apostolico and J. Hein",
  series = lncs,
  number = 1264,
  publisher = svb,
  year = 1997,
  pages = "52--64",
)

% LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL

@ARTICLE( LF80,
  author = "R. E.  Ladner and M. J. Fisher",
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  volume = 27,
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@ARTICLE( Lak81,
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@INPROCEEDINGS( LR99,
  author = "G. Lancia and R. Ravi",
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@INPROCEEDINGS( LLY2000,
  author = "J. K. Lanctot and M. Li and E. Yang",
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@PHDTHESIS( Lan86,
  author = "G. M. Landau",
  title = "String matching in erroneus input",
  type = "{Ph. D. Thesis}",
  school = "Department of Computer Science, Tel-Aviv University",
  year = 1986,
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@ARTICLE( LMS98,
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@INPROCEEDINGS( LS93,
  author = "G. M. Landau and J. P. Schmidt",
  title = "An algorithm for approximate tandem repeats",
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@INPROCEEDINGS( LSV87,
  author = "G. M. Landau and B. Schieber and U. Vishkin",
  title = "Parallel construction of a suffix tree",
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  year = 1987,
  pages = "314--325",
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@INPROCEEDINGS( LV85,
  author = "G. M. Landau and U. Vishkin",
  title = "Efficient string matching in the presence of errors",
  booktitle = proct#"26th "#focs,
  address = "Portland, Oregon",
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  year = 1985,
  pages = "126--136",
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@ARTICLE( LV86,
  author = "G. M. Landau and U. Vishkin",
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  year = 1986,
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@TECHREPORT( LV86b,
  author = "G. M. Landau and U. Vishkin",
  title = "Efficient parallel and serial approximate string matching",
  type = "Report",
  number = "TR-221-U101",
  institution = "Courant Institut of Mathematical Sciences, New York University, NY",
  year = 1986,
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@INPROCEEDINGS( LV86c,
  author = "G. M. Landau and U. Vishkin",
  title = "Introducing efficient parallelism into approximate string matching and a new serial algorithm",
  booktitle = proct#"18th "#stoc,
  address = "Berkeley, CA",
  publisher = acmp,
  year = 1986,
  pages = "220--230",
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@ARTICLE( LV88,
  author = "G. M. Landau and U. Vishkin",
  title = "Fast string matching with {$k$} differences",
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  volume = 37,
  number = 1,
  year = 1988,
  pages = "63--78",
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@ARTICLE( LV89,
  author = "G. M. Landau and U. Vishkin",
  title = "Fast parallel and serial approximate string matching",
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  volume = 10,
  number = 2,
  year = 1989,
  pages = "157--169",
)

@INPROCEEDINGS( LV93,
  author = "G. M. Landau and U. Vishkin",
  title = "Two dimensional pattern matching in digitized image",
  booktitle = proct#"4th "#cpm,
  address = padova,
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  series = lncs,
  number = 684,
  publisher = svb,
  year = 1993,
  pages = "134--151",
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@ARTICLE( LV94,
  author = "G. M. Landau and U. Vishkin",
  title = "Pattern Matching in Digitalized Image",
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  volume = 12,
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  year = 1994,
  pages = "375--408",
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@INCOLLECTION( LV97,
  author = "G. M. Landau and U. Vishkin",
  title = "Approximate string searching",
  booktitle = "Pattern matching algorithms",
  editor = "A. Apostolico and Z. Galil",
  publisher = oxup,
  year = 1997,
  chapter = 6,
  pages = "185--199",
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@TECHREPORT( LVN85,
  author = "G. M. Landau and U. Vishkin and R. Nussinov",
  title = "An efficient string matching algorithm with {$k$} differences for nucleotide and amino acid sequences",
  type = "Report",
  number = "TR-37/85",
  institution = "Department of Computer Science, Tel Aviv University",
  year = 1985,
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@ARTICLE( LVN88,
  author = "G. M. Landau and U. Vishkin and R. Nussinov",
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@INPROCEEDINGS( LZ2000,
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  address = frisco,
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  pages = "804--814",
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@INPROCEEDINGS( LMT88,
  author = "E. Lander and J. P. Mesirov and W. Taylor",
  title = "Protein sequence comparison on a data parallel computer",
  booktitle = proct#"1988 International Conference on Parallel Processing, (Algorithms and Applications)",
  address = "Pennsylvania State University Press, PA",
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  volume = 3,
  year = 1988,
  pages = "257--263",
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@INPROCEEDINGS( LMT88b,
  author = "E. Lander and J. P. Mesirov and W. {Taylor, IV}",
  title = "Study of protein sequence comparison metrics on the {Connection Machine} {{CM-2}}",
  booktitle = proc#"Supercomputing '88",
  address = orlando,
  editor = "J. L. Martin and S. F. Lundstrom",
  volume = 2,
  publisher = ieeecsp,
  year = 1988,
  pages = "2--12",
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@ARTICLE( LMT89,
  author = "E. Lander and J. P. Mesirov and W.{Taylor, IV}",
  title = "Study of Protein Sequence Comparison Metrics on the {Connection Machine CM-2}",
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  number = 4,
  year = 1989,
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@ARTICLE( LW91,
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@ARTICLE( Lar90,
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@INPROCEEDINGS( LR92,
  author = "L. L. Larmore and W. Rytter",
  title = "Efficient sublinear time parallel algorithms for dynamic programming and context-free recognition",
  booktitle = proct#"9th "#stacs,
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@TECHREPORT( Lec92c,
  author = "T. Lecroq",
  title = "Recherches de mot",
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@TECHREPORT( Lec94,
  author = "T. Lecroq",
  title = "Experimental results on string matching algorithms",
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@BOOK( Lot83,
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  publisher = aw,
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  year = 1983,
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@BOOK( Lot97,
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@TECHREPORT( LS92,
  author = "G. Louchard and W. Szpankowski",
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@INPROCEEDINGS( LS93b,
  author = "G. Louchard and W. Szpankowski",
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  booktitle = proct#"4th "#cpm,
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@ARTICLE( LW75,
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@INPROCEEDINGS( Lu90,
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@ARTICLE( LL94,
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@ARTICLE( Lu79,
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@ARTICLE( Lu84,
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@PHDTHESIS( Luc87,
  author = "S. Lucci",
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  school = "City University of New york",
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@ARTICLE( LP91,
  author = "F. Luccio and L. Pagli",
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@INPROCEEDINGS( LP91b,
  author = "F. Luccio and L. Pagli",
  title = "Simple solutions for approximate tree matching problems", 
  booktitle = proct#"International Joint Conference on Theory and Practice of Software Development",
  address = "Brighton, U.K.",
  editor = "S. Abramsky and T. S. E. Maibaum",
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@ARTICLE( LP95,
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@MISC( Luc94,
  author = "G. Luce",
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@PHDTHESIS( Luc97,
  author = "G. Luce",
  title = "Algorithmique systolique pour le probl{\`e}me du plus long sous-mot commun et impl{\'e}mentation sur un r{\'e}seau de transputers",
  school = "Universit{\'e} d'Amiens, France",
  year = 1997,
)

@TECHREPORT( LM95b,
  author = "G. Luce and J.-F. Myoupo",
  title = "An efficient linear systolic algorithm for recovering longest common subsequences",
  type = "Rapport",
  number = "LAMIFA 95-06",
  institution = "Universit{\'e} d'Amiens, France",
  year = 1995,
)

@INPROCEEDINGS( LM95c,
  author = "G. Luce and J.-F. Myoupo",
  title = "An Efficient Linear Systolic Array for Recovering Longest Common Subsequences",
  booktitle = proct#"1st IEEE Int. Conf. Algo. Archi. Parall. Proc.",
  volume = 1,
  year = 1995,
  pages = "20--29",
)

@TECHREPORT( LM95d,
  author = "G. Luce and J.-F. Myoupo",
  title = "Systolic-Based Parallel Architecture for the Longest Common Subsequence Problem",
  type = "Rapport",
  number = "LAMIFA 95-15",
  institution = "Universit{\'e} d'Amiens, France",
  year = 1995,
)

@INPROCEEDINGS( LM97,
  author = "G. Luce and J.-F. Myoupo",
  title = "{Efficient Parallel Computing of a Longest Common Subsequence of Three Strings}",  
  booktitle = proct#"8th SIAM Conf. Parall. Proc. Sci. Comp.", 
  year = 1997,
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@INPROCEEDINGS( LS94,
  author = "T. Luczak and W. Szpankowski",
  title = "A Lossy Data Compression Based on String Matching: Preliminary Analysis and Suboptimal Algorithms",
  booktitle = proct#"5th "#cpm,
  address = asilo,
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
  publisher = svb,
  year = 1994,
  pages = "102--112",
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@ARTICLE( LS97,
  author = "T. Luczak and W. Szpankowski",
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  volume = 43,
  year = 1997,
  pages = "1439--1451",
)

@ARTICLE( LS62,
  author = "R. C. Lyndon and M. P. Sch{\"u}tzenberger",
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@ARTICLE( Lyo74,
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  number = 1,
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)

% MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM

@INPROCEEDINGS( Ma2000,
  author = "B. Ma",
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@INPROCEEDINGS( MWL98,
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@INPROCEEDINGS( Maa2000,
  author = "M. G. Maa{\ss}",
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  booktitle = proct#"11th "#cpm,
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  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "320--334",
)

@ARTICLE( MO87,
  author = "K. Madlener and F. Otto",
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@ARTICLE( Mae90,
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@TECHREPORT( MRS96,
  author = "H. M. Mahmoud and M. R{\'e}gnier and R. T. Smythe",
  title = "Analysis of {Boyer-Moore-Horspool} String-Matching Heuristic",
  type = "Report",
  number = "9634",
  institution = "The George Washington University",
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)

@TECHREPORT( MS95,
  author = "H. M. Mahmoud and R. T. Smythe",
  title = "An Asymptotically-Optimal Variation of the {Knuth-Morris-Pratt} String Matching Algorithm",
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  institution = "The George Washington University",
  year = 1995,
)

@ARTICLE( Mai78,
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@TECHREPORT( MS77,
  author = "D. Maier and J. A. Storer",
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  institution = "Computer Science Laboratory, Princeton University",
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@ARTICLE( Mai89,
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@TECHREPORT( ML79,
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  type = "Report",
  number = "CS-79-056",
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@ARTICLE( ML84,
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@INCOLLECTION( ML85,
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@ARTICLE( Mai94,
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@ARTICLE( MR80,
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@TECHREPORT( MA93,
  author = "G. S. Makanin and H. Abdulrab",
  title = "On general solution of word equations",
  type = "Rapport",
  number = "LITP 93.42",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@TECHREPORT( MA93b,
  author = "G. S. Makanin and H. Abdulrab",
  title = "Parametric word equations",
  type = "Rapport",
  number = "LITP 93.43",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@TECHREPORT( MA93c,
  author = "G. S. Makanin and H. Abdulrab",
  title = "Transformations of word equations in three variables = Rouen's function",
  type = "Rapport",
  number = "LITP 93.44",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@TECHREPORT( MA93d,
  author = "G. S. Makanin and H. Abdulrab",
  title = "Transformation algorithm for word equations in four variables",
  type = "Rapport",
  number = "LITP 93.49",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@INCOLLECTION( MA94,
  author = "G. S. Makanin and H. Abdulrab",
  title = "On general solution of word equations",
  booktitle = "Results and Trends in Theoretical Computer Science",
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  year = 1994,
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  publisher = svb,
)

@TECHREPORT( MAM93,
  author = "G. S. Makanin and H. Abdulrab and M. N. Maksimenko",
  title = "Bunches of formal parametric equations",
  type = "Rapport",
  number = "LITP 93.62",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@ARTICLE( Mak89,
  author = "E. M{\"a}kinen",
  title = "On the subtree isomorphism problem for ordered trees",
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  year = 1989,
  volume = 32,
  number = 5,
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@INPROCEEDINGS( Mak2000,
  author = "V. M{\"a}kinen",
  title = "Compact Suffix Array",
  booktitle = proct#"11th "#cpm,
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@TECHREPORT( Mak93,
  author = "M. N. Maksimenko",
  title = "Algorithme quadratique de calcul de la solution g{\'e}n{\'e}rale d'{\'e}quations en mots {\`a} une variable",
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  institution = "Universit{\'e}s Paris 6 et 7",
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)

@ARTICLE( Mak95,
  author = "M. N. Maksimenko",
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@ARTICLE( Mal76,
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@ARTICLE( Man75,
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@ARTICLE( Man76,
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@BOOK( Man89,
  author = "U. Manber",
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@INPROCEEDINGS( Man94,
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  booktitle = proct#"USENIX Winter 1994 Technical Conference",
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@INPROCEEDINGS( Man94b,
  author = "U. Manber",
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@ARTICLE( Man97,
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@ARTICLE( MBY91,
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@INPROCEEDINGS( MM90,
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@ARTICLE( MM93,
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@TECHREPORT( MW89,
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  type = "Report",
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  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
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@INPROCEEDINGS( MW92,
  author = "U. Manber and S. Wu",
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  booktitle = proct#"IAPR Workshop on Structural and Syntactic Pattern Recognition",
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  address = "Bern, Switzerland",
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@ARTICLE( MW92b,
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@INPROCEEDINGS( MW94,
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  booktitle = proct#"USENIX Winter 1994 Technical Conference",
  year = 1994,
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@ARTICLE( MMPS94,
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@INPROCEEDINGS( MAE86,
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@ARTICLE( MS2000,
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@INPROCEEDINGS( MS2000b,
  author = "L. Marsan and M.-F. Sagot",
  title = "Extracting structured motifs using a suffix tree - {A}lgorithms and application to consensus identification",
  booktitle = proct#"4th "#recomb,
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@ARTICLE( Mar76,
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@ARTICLE( Mar83,
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@ARTICLE( Mar66,
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@ARTICLE( Mar88,
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@ARTICLE( MV93,
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@ARTICLE( MP80,
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@INCOLLECTION( MP83,
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@INPROCEEDINGS( MS94,
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@INPROCEEDINGS( MMSZ98,
  author = "Y. Matias and S. Muthukrishnan and S. C. Sahinalpk and J. Ziv",
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@ARTICLE( McC76,
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@ARTICLE( MPBDS76,
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@TECHREPORT( MM91,
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@ARTICLE( MM93b,
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@BOOK( Meh84,
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@ARTICLE( MG89,
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@TECHREPORT( MS91,
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@TECHREPORT( MS91b,
  author = "D. P. Mehta and S. Sahni",
  title = "A data structure for circular string analysis and visualization",
  institution = "University of Florida",
  year = 1991,
  type = "Report",
  number = "025",
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@INPROCEEDINGS( MS92,
  author = "D. P. Mehta and S. Sahni",
  title = "Computing display conflicts in string and circular string visualization",
  booktitle = proct#"3rd "#cpm,
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  year = 1992,
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  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
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@ARTICLE( MS93,
  author = "D. P. Mehta and S. Sahni",
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@ARTICLE( MS94b,
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@INPROCEEDINGS( MS95c,
  author = "J. Meidanis and J. C. Setubal",
  title = "Multiple alignment of biological sequences with gap flexibility",
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@INPROCEEDINGS( MWD97,
  author = "J. Meidanis and M.E. Walter and  Z. Dias",
  title = "Transposition distance between a permutation and its reverse",
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  title = "Approximate String Matching by Finite Automata",
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@ARTICLE( MNC91,
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@ARTICLE( MS95b,
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  author = "R. Muthukrishnan",
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@ARTICLE( Mut2000,
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@UNPUBLISHED( MH92,
  author = "S. Muthukrishnan and R. Hariharan",
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@TECHREPORT( MP93,
  author = "S. Muthukrishnan and K. Palem",
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@INPROCEEDINGS( MP93b,
  author = "S. Muthukrishnan and K. Palem",
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@INPROCEEDINGS( MR92,
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)

@ARTICLE( MR95,
  author = "S. Muthukrishnan and H. Ramesh",
  title = "String matching under a general matching relation",
  journal = infcomp,
  volume = 122,
  number = 1,
  year = 1995,
  pages = "140--148",
)

@INPROCEEDINGS( Muz96,
  author = "P. Mu{\v z}{\'a}tko",
  title = "Approximate regular expression matching",
  booktitle = proct#pscw0#"~'96",
  editor = "J. Holub",
  year = 1996,
  pages = "37--41",
  address = ctu,
  note = "Collaborative Report DC--96--10",
)

@INPROCEEDINGS( Mye84,
  author = "E. W. Myers",
  title = "Efficient applicatives data types",
  booktitle = proct#"11th "#popl,
  year = 1984,
  pages = "66--75",
  publisher = acmp,
  address = "Salt Lake City, UT",
)

@ARTICLE( Mye86,
  author = "E. W. Myers",
  title = "An {$O(ND)$} difference algorithm and its variations",
  journal = algo,
  volume = 1,
  year = 1986,
  pages = "251--266",
)

@TECHREPORT( Mye86b,
  author = "E. W. Myers",
  title = "Incremental alignment algorithms and their applications",
  type = "Report",
  number = "TR-90-25",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1986,
)

@TECHREPORT( Mye88,
  author = "E. W. Myers",
  title = "A four-russian algorithm for regular expression pattern matching",
  type = "Report",
  number = "TR-88-34",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1988,
)

@TECHREPORT( Mye90,
  author = "E. W. Myers",
  title = "A sublinear algorithm for approximate keyword searching",
  type = "Report",
  number = "TR-90-25",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1990,
)

@TECHREPORT( Mye91,
  author = "E. W. Myers",
  title = "An overview of sequence comparison algorithm in molecular biology",
  type = "Report",
  number = "TR-91-29",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1991,
)

@TECHREPORT( Mye92,
  author = "E. W. Myers",
  title = "Approximate matching of Network expression with spacers",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1992,
  type = "Report",
  number = "TR-92-5",
)

@ARTICLE( Mye92b,
  author = "E. W. Myers",
  title = "A Four Russians Algorithm for Regular Expression Pattern Matching",
  journal = jacm,
  year = 1992,
  volume = 39,
  number = 2,
  pages = "430--448",
)

@TECHREPORT( Mye94,
  author = "E. W. Myers",
  title = "Approximately Matching Context-Free Languages",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1994,
  type = "Report",
  number = "TR-94-22",
)

@ARTICLE( Mye94b,
  author = "E. W. Myers ",
  title = "A Sublinear Algorithm for Approximate Keyword Searching",
  journal = algo,
  year = 1994,
  volume = 12,
  number = "4/5",
  pages = "345--374",
)

@ARTICLE( Mye95,
  author = "E. W. Myers",
  title = "Approximately matching context-free languages",
  journal = ipl,
  volume = 54,
  number = 2,
  year = 1995,
  pages = "85--92",
)

@INPROCEEDINGS( Mye95b,
  author = "E. W. Myers",
  title = "Approximately matching context-free languages",
  booktitle = proct#"2nd "#wsp,
  pages = "38--52",
  address = "Valpara{\' \i}so, Chile",
  editor = "R. Baeza-Yates and U. Manber",
  year = 1995,
)

@INPROCEEDINGS( Mye98,
  author = "G. Myers",
  title = "An $O(N)$ Bit-Vector Algorithm for Approximate String Matching",
  booktitle = proct#"9th "#cpm,
  series = lncs,
  year = 1998,
  address = rutgers,
  number = 1448,
  editor = "M. Farach-Colton",
  publisher = svb,
  pages = "1--13",
)

@ARTICLE( Mye99,
  author = "G. Myers",
  title = "A fast bit-vector algorithm for approximate string matching based on dynamic programming",
  journal = jacm,
  volume = 46,
  number = 3,
  year = 1999,
  pages = "395--415",
)

@TECHREPORT( MH90,
  author = "E. W. Myers and X. Huang",
  title = "An {$O(N^2\log N)$} restriction map comparison and search algorithm",
  type = "Report",
  number = "TR-90-11",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1990,
)

@ARTICLE( MM88d,
  author = "E. W. Myers and W. Miller",
  title = "Optimal alignment in linear space",
  journal = cabios,
  volume = 4,
  number = 1,
  year = 1988,
  pages = "11--17",
)

@TECHREPORT( MM88c,
  author = "E. W. Myers and W. Miller",
  title = "Approximate matching of regular expressions",
  type = "Report",
  number = "CS-88-20",
  institution = "Department of Computer Science, Penn State University",
  year = 1988,
)

@ARTICLE( MM89,
  author = "E. W. Myers and W. Miller",
  title = "Approximate matching of regular expressions",
  journal = bmathbiol,
  volume = 51,
  year = 1989,
  pages = "7--37",
)

@ARTICLE( MM89b,
  author = "E. W. Myers and W. Miller",
  title = "Row replacement algorithms for screen editors",
  journal = acmpls,
  year = 1989,
  volume = 11,
  number = 1,
  pages = "33--56",
)

@INPROCEEDINGS( MM95,
  author = "E. W. Myers and W. Miller",
  title = "Chaining Multiple-Alignment Fragments in Sub-Quadratic Time",
  booktitle = proct#"6th "#soda,
  address = frisco,
  year=1995,
  pages = "38--47",
)

@ARTICLE( MM86,
  author = "E. W. Myers and D. Mount",
  title = "Computer program for the {IBM} personal computer that searches for approximate matches of short oligonucleotide sequences in long target {DNA} sequences",
  journal = nucacires,
  volume = 14,
  year = 1986,
  pages = "501--508",
)

@INPROCEEDINGS( MOK98,
  author = "E. W. Myers and P. Oliva and K. Guim{\~a}raes",
  title = "Reporting Exact and Approximate Regular Expression Matches",
  booktitle = proct#"9th "#cpm,
  series = lncs,
  year = 1998,
  address = rutgers,
  number = 1448,
  editor = "M. Farach-Colton",
  publisher = svb,
  pages = "91--103",
)

@INPROCEEDINGS( MSZM97,
  author = "E. W. Myers and S. Selznick and Z. Zhang and W.  Miller",
  title = "Progressive Multiple Alignment with Constraints",
  booktitle = proct#"1st "#recomb,
  publisher = acmp,
  address = "Santa Fe, NM",
  year = 1997,
  pages = "220--225",
)

@INPROCEEDINGS( MW96,
  author = "J.-F. Myoupo and A. Wabbi",
  title = "Improved systolic algorithms for substrings statistics",
  booktitle = proct#"2nd International Conference on Algorithms and Architextures for Parallel Processing",
  year = 1996,
  address = "Singapore",
  pages = "9--13",
)

% NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

@INPROCEEDINGS( NHIH94,
  author = "M. Nakanishi and M. Hasidume and M. Ito and A. Hashimoto",
  title = "A Linear-Time Algorithm for Computing Characteristic Strings",
  editor = "D.-Z. Du and X.-S. Zhang",
  number = 834,
  series = lncs,
  pages = "315--323",
  booktitle = proct#"5th "#isaac,
  year = 1994,
  publisher = svb,
  address = "Beijing, P.R. China",
)

@ARTICLE( NKY82,
  author = "N. Nakatsu and Y. Kambayashi and S. Yajima",
  title = "A longest common subsequence algorithm suitable for similar text strings",
  journal = acta,
  volume = 18,
  year = 1982,
  pages = "171--179",
)

@INPROCEEDINGS( Nao91,
  author = "M. Naor",
  title = "String matching with preprocessing of text and pattern",
  booktitle = proct#"18th "#icalp,
  series = lncs,
  number = 510,
  year = 1991,
  pages = "739--750",
  address = "Madrid, Spain",
  publisher = svb,
  editor = "J. Leach Albert and B. Monien and M. Rodriguez Artalejo",
)

@INPROCEEDINGS( NB93,
  author = "M. Naor and D. Brutlag",
  title = "On suboptimal alignments of biological sequences",
  booktitle = proct#"4th "#cpm,
  series = lncs,
  number = 684,
  year = 1993,
  pages = "179--196",
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  address = padova,
  publisher = svb,
)

@INPROCEEDINGS( Nav96,
  author = "G. Navarro",
  title = "An optimal index for PAT arrays",
  booktitle = proct#"3rd "#wsp,
  pages = "214--227",
  publisher = cup,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  year = 1996,
)

@INPROCEEDINGS( Nav97,
  author = "G. Navarro",
  title = "A Partial Deterministic Automaton for Approximate String Matching",
  booktitle = proct#"4th "#wsp,
  publisher = cup,
  address = "Valparaiso, Chile",
  editor = "R. Baeza-Yates",
  year = 1997,
  pages = "95--111",
)

@INPROCEEDINGS( Nav97b,
  author = "G. Navarro",
  title = "Multiple Approximate String Matching by Counting",
  booktitle = proct#"4th "#wsp,
  publisher = cup,
  address = "Valparaiso, Chile",
  editor = "R. Baeza-Yates",
  year = 1997,
  pages = "95--111",
)

@INPROCEEDINGS( Nav98,
  author = "G. Navarro",
  title = "Improved Approximate Pattern Matching on Hypertex",
  booktitle = proct#"3rd "#latin,
  address = "Campinas, Brazil",
  year = 1998,
  pages = "352--357",
  editor = "C. L. Lucchesi and A. V. Moura",
  series = lncs,
  number = 1380,
  publisher = svb,
)

@PHDTHESIS( Nav98b,
  author = "G. Navarro",
  title = "Approximate Text Searching",
  school = "Dept. of Computer Science, University of Chile",
  year = 1998,
)

@ARTICLE( Nav99,
  author = "G. Navarro",
  title = "Very fast and simple approximate string matching",
  journal = ipl,
  volume = 72,
  number = "1--2",
  year =1999,
  pages = "65--70",
)

@ARTICLE( Nav2000,
  author = "G. Navarro",
  title = "Improved Approximate Pattern Matching on Hypertext",
  journal = tcs,
  volume = 237,
  number = "1--2",
  year = 2000,
  pages = "455--463",
)

@TECHREPORT( NBY98,
  author = "G. Navarro and R. Baeza-Yates",
  title = "Improving an algorithm for approximate pattern matching",
  institution = "Dept. of Computer Science, University of Chile",
  type = "Technical Report",
  number = "TR/DCC-98-5",
  year = 1998,
)

@ARTICLE( NBY98b,
  author = "G. Navarro and R. Baeza-Yates",
  title = "A practical $q$-gram index for text retrieval allowing errors",
  journal = "CLEI Electonic Journal",
  volume = 1,
  number = 2,
  year = 1998,
)

@TECHREPORT( NBY98c,
  author = "G. Navarro and R. Baeza-Yates",
  title = "Very fast and simple approximate string matching",
  institution = "Dept. of Computer Science, University of Chile",
  type = "Technical Report",
  number = "TR/DCC-98-6",
  year = 1998,
)

@INPROCEEDINGS( NBY99a,
  author = "G. Navarro and R. Baeza-Yates",
  title = "A New Indexing Method for Approximate String Matching",
  booktitle = proct#"10th "#cpm,
  address = warwick,
  editor = "M. Crochemore and M. Paterson",
  series = lncs,
  number = 1645,
  publisher = svb,
  year = 1999,
  pages = "163--185",
)

@INPROCEEDINGS( NBY99b,
  author = "G. Navarro and R. Baeza-Yates",
  title = "Fast Multi-Dimensional Approximate Pattern Matching",
  booktitle = proct#"10th "#cpm,
  address = warwick,
  editor = "M. Crochemore and M. Paterson",
  series = lncs,
  number = 1645,
  publisher = svb,
  year = 1999,
  pages = "243--257",
)

@ARTICLE( NBY2000,
  author = "G. Navarro and R. Baeza-Yates",
  title = "A Hybrid Indexing Method for Approximate String Matching",
  journal = jda,
  volume = 1,
  number = 1,
  year = 2000,
  pages = "205--239",
)

@INPROCEEDINGS( NKRNZ97,
  author = "G. Navarro and J. P. Kitajima and B. A. Ribeiro-Neto and N. Ziviani",
  title = "Distributed generation of suffix arrays",
  booktitle = proct#"8th "#cpm,
  series = lncs,
  number = 1264,
  year = 1997,
  pages = "102--115",
  editor = "A. Apostolico and J. Hein",
  address = aarhus,
  publisher = svb,
)

@TECHREPORT( NR98a,
  author = "G. Navarro and M. Raffinot",
  title = "A Bit-parallel Approach to Suffix Automata: Fast Extended String Matching",
  institution = "Department of Computer Science, University of Chile",
  number = "TR/DC--98--1",
  year = 1998,
)

@INPROCEEDINGS( NR98b,
  author = "G. Navarro and M. Raffinot",
  title = "A Bit-parallel Approach to Suffix Automata: Fast Extended String Matching",
  booktitle = proct#"9th "#cpm,
  series = lncs,
  year = 1998,
  address = rutgers,
  number = 1448,
  editor = "M. Farach-Colton",
  publisher = svb,
  pages = "14--33",
)

@TECHREPORT( NR98c,
  author = "G. Navarro and M. Raffinot",
  title = "Fast and Flexible String Matching by Combining Bit-parallelism and Suffix Automata",
  institution = "Department of Computer Science, University of Chile",
  number = "TR/DC--98--4",
  year = 1998,
)

@INPROCEEDINGS( NR99a,
  author = "G. Navarro and M. Raffinot",
  title = "Fast regular expression search",
  booktitle = proct#"3rd "#wae,
  address = london,
  editor = "J.S. Vitter and C.D. Zaroliagis",
  series = lncs,
  number = 1668,
  publisher = svb,
  year = 1999,
  pages = "199--213",
)

@INPROCEEDINGS( NR99b,
  author = "G. Navarro and M. Raffinot",
  title = "A General Practical Approach to Pattern Matching over {Ziv-Lempel} Compressed Text",
  booktitle = proct#"10th "#cpm,
  address = warwick,
  editor = "M. Crochemore and M. Paterson",
  series = lncs,
  number = 1645,
  publisher = svb,
  year = 1999,
  pages = "14--36",
)

@INPROCEEDINGS( NSTT2000,
  author = "G. Navarro and E. Sutinen and J. Tanninen and J. Tarhio",
  title = "Indexing Text with Approximate q-Grams",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "350--363",
)

@INPROCEEDINGS( NT2000,
  author = "G. Navarro and J. Tarhio",
  title = "{Boyer-Moore} String Matching over Ziv-Lempel Compressed Text",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "166--180",
)

@ARTICLE( Ned98,
  author = "N. Nedjah",
  title = "Minimal Deterministic Left-to-Right Pattern-Matching Automata",
  journal = sigplann,
  volume = 33,
  number = 1,
  year = 1998,
  pages = "40--47",
)

@ARTICLE( NWE99,
  author = "N. Nedjah and C. D. Walter and S. E. Eldridge",
  title = "Efficient automata-driven pattern-matching for equational programs",
  journal = spe,
  volume = 29,
  number = 9,
  pages = "793--813",
  year = 1999,
)

@ARTICLE( NW70,
  author = "S. B. Needleman and C. D. Wunsch",
  title = "A general method applicable to the search for similarities in the amino acid sequence of two proteins",
  journal = jmolbiol,
  volume = 48,
  year = 1970,
  pages = "443--453",
)

@INPROCEEDINGS( NB89,
  author = "M. Neff and B. K. Boguraev",
  title = "Dictionaries, dictionary grammars and dictionary entry parsing",
  booktitle = proct#"27th Annual Meeting of the Association for Computational Linguistics",
  year = 1989,
  pages = "91--101",
)

@INPROCEEDINGS( NKS2000,
  author = "M. R. Nelson and S. L. Kardia and C. F. Sing",
  title = "The Combinatorial Partitioning Method",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "293--304",
)

@TECHREPORT( Ner88,
  author = "J. N{\'e}raud",
  title = "Computing the rank of a finite set of word is NP-complete",
  type = "Rapport",
  number = "LITP 88.28",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1988,
)

@TECHREPORT( Ner88b,
  author = "J. N{\'e}raud",
  title = "On the deficit of a finite set of words",
  type = "Rapport",
  number = "LITP 88.56",
  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1988,
)

@ARTICLE( Ner90,
  author = "J. N{\'e}raud",
  title = "Elementariness of a finite set of words is co-NP-complete",
  journal = rairoita,
  volume = 24,
  number = 5,
  year = 1990,
  pages = "459--470",
)

@ARTICLE( Ner90b,
  author = "J. N{\'e}raud",
  title = "On the deficit of a finite set of words",
  journal = sgfor,
  volume = 41,
  year = 1990,
  pages = "1--21",
)

@INPROCEEDINGS( Ner91,
  author = "J. N{\'e}raud",
  title = "On the rank of the subsets of a free monoid, Deciding whether a finite set of words has rank at most two",
  booktitle = proc#fct,
  address = "Gosen near Berlin, Germany",
  editor = "L. Budach",
  series = lncs,
  number = 529,
  year = 1991,
  pages = "360--369",
)

@ARTICLE( Ner92,
  author = "J. N{\'e}raud",
  title = "On the rank of the subsets of a free monoid",
  journal = tcs,
  volume = 99,
  number = 2,
  year = 1992,
  pages = "231--241",
)

@ARTICLE( Ner93,
  author = "J. N{\'e}raud",
  title = "Deciding whether a finite set of words has rank at most two",
  journal = tcs,
  volume = 112,
  number = 2,
  year = 1993,
  pages = "311--337",
)

@INPROCEEDINGS( Ner93b,
  author = "J. N{\'e}raud",
  title = "New algorithms for detecting morphic images of a word",
  booktitle = proct#"18th "#mfcs,
  address = "Gdansk, Poland",
  series = lncs,
  number = 711,
  year = 1993,
  pages = "588--597",
  publisher = svb,
)

@TECHREPORT( Ner93e,
  author = "J. N{\'e}raud",
  title = "Detecting morphic images of a word: improving the general algorithm",
  type = "Rapport",
  number = "LITP 93.54",
  institution = "Universit{\'e}s Paris 6 et 7",
  year = 1993,
)

@ARTICLE( Ner94,
  author = "J. N{\'e}raud",
  title = "A special class of equations in words: efficient computation of the solutions",
  journal = bbms,
  volume = 1,
  number = 2,
  year = 1994,
  pages = "253--283",
)

@TECHREPORT( Ner95,
  author = "J. N{\'e}raud",
  title = "Pour une description structurelle des sous-ensembles du mono{\"\i}de libre : Images homomorphes, concepts combinatoires et r{\'e}sultats de complexit{\'e}",
  type = "Th{\`e}se d'habilitation, Rapport",
  number = "LIR95.02 Informatique Fondamentale",
  institution = "Universit{\'e} de Rouen, France",
  year = 1995,
)

@ARTICLE( Ner95b,
  author = "J. N{\'e}raud",
  title = "Detecting morphic images of a word: On the rank of a pattern",
  journal = acta,
  volume = 32,
  pages = "477--489",
  year = 1995,
)

@ARTICLE( Ner95c,
  author = "J. N{\'e}raud",
  title = "Algorithms for detecting morphic images of a word",
  journal = infcomp,
  volume = 120,
  number = 1,
  pages = "126--148",
  year = 1993,
)

@ARTICLE( Ner97,
  author = "J. N{\'e}raud",
  title = "Detecting the morphic images of a word: improving the general algorithm",
  journal = rairoita,
  volume = 31,
  number = 1,
  year = 1997,
  pages = "1--14",
)

@ARTICLE( NC92,
  author = "J. N{\'e}raud and M. Crochemore",
  title = "A string matching interpretation of the equation {$x^my^n=z^p$}",
  journal = tcs,
  volume = 92,
  number = 1,
  year = 1992,
  pages = "145--164",
)

@ARTICLE( Nes86,
  author = "J. Nesbit",
  title = "The accuracy of approximate string matching algorithms",
  journal = "Journal of Computer-Based Instruction",
  volume = 13,
  number = 3,
  year = 1986,
  pages = "80--83",
)

@INPROCEEDINGS( NMW99,
  author = "C. Nevill-Manning and Ian H. Witten",
  title = "Protein is incompressible",
  booktitle = proc#dcc,
  year = 1999,
  pages = "257--266"
)

@PHDTHESIS( Nic97,
  author = "P. Nicodeme",
  title = "Alignement avec des familles de s\'equences prot\'eiques",
  school = "Universit\'e Paris VII",
  year = 1997,
)

@ARTICLE( Nic98,
  author = "P. Nicodeme",
  title = "{SSMAL}: similarity searching with alignment graphs",
  journal = bioinfo,
  volume = 14,
  number = 6,
  year = 1998,
  pages = "508--515",
)

@UNPUBLISHED( NR92,
  author = "P. Nicodeme and M. R{\'e}gnier",
  title = "Towards {2D} pattern matching complexity",
  note = "Manuscript",
  year = 1992,
)

@INPROCEEDINGS( NSF99,
  author = "P. Nicodeme and B. Salvy and P. Flajolet",
  title = "Motif Statistics",
  booktitle = proc#esa,
  series = lncs,
  volume = 1643,
  publisher = svb,
  year = 1999,
  pages = "194--211",
)

@ARTICLE( Nie73,
  author = "P. T. Nielsen",
  title = "On the expected duration of a search for a fixed pattern in random data",
  journal = ieeetit,
  volume = 19,
  year = 1973,
  pages = "702--704",
)

@ARTICLE( Nie73b,
  author = "P. T. Nielsen",
  title = "A note on bifix-free sequences",
  journal = ieeetit,
  volume = 19,
  year = 1973,
  pages = "704--707",
)

@ARTICLE( Nil88,
  author = "K. Nilsen",
  title = "Garbage Collection of Strings and Linked Data Structures in Real Time",
  journal = spe,
  volume = 18,
  number = 7,
  pages = "613--640",
  year = 1988,
)

@INPROCEEDINGS( NT98,
  title = "Implementing a dynamic compressed trie",
  author = "S. Nilsson and M. Tikkanen",
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  year = 1998, 
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@ARTICLE( Niv79,
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@ARTICLE( Nus83,
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@ARTICLE( NPGK78,
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  year = 1978,
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@ARTICLE( NU94,
  author = "M. Nyk{\"a}nen and E. Ukkonen",
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  number = 6,
  year = 1994,
  pages = "307--310",
)

% OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO

@INPROCEEDINGS( Obs87,
  author = "W. Obst",
  title = "Delta Technique and String-to-String Correction",
  booktitle = proct#"1st European Software Engineering Conference",
  series = lncs,
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  year = 1987,
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@INPROCEEDINGS( Ohl97,
  author = "E. Ohlebusch",
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@ARTICLE( OTK76,
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@ARTICLE( Oom87,
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@ARTICLE( Oom87b,
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  year = 1987,
  pages = "267--284",
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@UNPUBLISHED( Oom92,
  author = "B. J. Oommen",
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  note = "Manuscript",
  year = 1992,
)

@INPROCEEDINGS( OF91,
  author = "B. J. Oommen and E. T. Floyd",
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  booktitle = proct#"IASTED International Symposium on Artificial Intelligence Applications and Neural Networks",
  year = 1991,
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@ARTICLE( OZ96,
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@ARTICLE( Ore82,
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  volume = 14,
  number = 4,
  year = 1982,
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@ARTICLE( Ott95,
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@ARTICLE( OCNKM88,
  author = "J. Owens and D. Chatterjee and R. Nussinov and A. K. Konopka and Maizel, Jr, J. V.",
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  year = 1988,
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@ARTICLE( Owo93,
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  number = 1,
  year = 1993,
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@ARTICLE( OMG88,
  author = "O. Owolabi and D. R. McGregor",
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  volume = 18,
  number = 4,
  year = 1988,
  pages = "387--393",
)

% PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP

@ARTICLE( PK82,
  author = "R. Paige and S. Koenig",
  title = "Finite differencing of computable expressions",
  journal = acmpls,
  year = 1982,
  volume = 4,
  number = 3,
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@INPROCEEDINGS( Par2000,
  author = "L. Parida",
  title = "Some Results on Flexible-Pattern Discovery",
  booktitle = proct#"11th "#cpm,
  address = montreal,
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  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
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@ARTICLE( PFR00,
  author = "L. Parida and A. Floratos and I. Rigoutsos",
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@INPROCEEDINGS( PGPFR2000,
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@INPROCEEDINGS( PW86,
  author = "R. Pajarola and P. Widmayer",
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  year = 1996,
)

@INPROCEEDINGS( PG99,
  author = "J. Park and K. George",
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@INPROCEEDINGS( Par96,
  author = "K. Park",
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@ARTICLE( Par98,
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@INPROCEEDINGS( PRFPG2000,
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@ARTICLE( PS91,
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@INCOLLECTION( PV91,
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@ARTICLE( PA92,
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@ARTICLE( Pea90,
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@ARTICLE( Pea90b,
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@ARTICLE( Pea91,
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@PHDTHESIS( Pec81,
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@ARTICLE( Per94,
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@INCOLLECTION( Per85,
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@TECHREPORT( Per88,
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  type = "Rapport",
  number = "LITP 88.51",
  institution = "Universit{\'e}s Paris 6 et 7, France",
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@ARTICLE( Per89,
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@TECHREPORT( PP93,
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  type = "Rapport",
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@INPROCEEDINGS( Pet94,
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@ARTICLE( PL88b,
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@INPROCEEDINGS( PPR96,
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@ARTICLE( Pev92,
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@INPROCEEDINGS( Pev92b,
  author = "P. A. Pevzner",
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@ARTICLE( Pev95,
  author = "P. A. Pevzner",
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@BOOK( Pev2000,
  author = "P. A. Pevzner",
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  year = 2000,
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@UNPUBLISHED( PL93,
  author = "P. A. Pevzner and R. Lipshutz",
  title = "Towards {DNA} sequencing by hybridization",
  note = "Manuscript",
  year = 1993,
)

@INPROCEEDINGS( PW94,
  author = "P. A. Pevzner and R. Lipshutz",
  title = "Towards {DNA} sequencing chips",
  booktitle = proct#"19th "#mfcs,
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  year = 1994,
  pages = "143--158",
  editor = "I. Pr\'{\i}vara and B. Rovan and P. Ru{\v z}i{\v c}ka",
  address = "Ko{\v s}ice, Slovakia",
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)

@INPROCEEDINGS( PS2000,
  author = "P. A. Pevzner and S.-H. Sze",
  title = "Combinatorial Approaches to Finding Subtle Signals in {DNA} Sequences",
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  year = 2000,
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@ARTICLE( PV95,
  author = "P. A. Pevzner and M. Vingron",
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  volume = 16,
  year = 1995,
  pages = "1--22",
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@INPROCEEDINGS( PW92b,
  author = "P. A. Pevzner and M. S. Waterman",
  title = "Matrix longest common subsequence problem, duality and Hilbert bases",
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  year = 1992,
  pages = "79--89",
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  address = tucson,
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@ARTICLE( PW93,
  author = "P. A. Pevzner and M. S. Waterman",
  title = "Generalized sequence alignment and duality",
  journal = aappmat,
  volume = 14,
  year = 1993,
  pages = "139--171",
)

@INPROCEEDINGS( PW93b,
  author = "P. A. Pevzner and M. S. Waterman",
  title = "A fast filtration algorithm for the substring matching problem",
  booktitle = proct#"4th "#cpm,
  series = lncs,
  number = 684,
  year = 1993,
  pages = "197--214",
  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
  address = padova,
  publisher = svb,
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@ARTICLE( PW93c,
  author = "P. A. Pevzner and M. S. Waterman",
  title = "Generalized sequence alignment and duality",
  journal = aappmat,
  volume = 14,
  number = 2,
  year = 1993,
  pages = "139--171",
)

@ARTICLE( PW95,
  author = "P. A. Pevzner and M. S. Waterman",
  title = "Multiple Filtration and Approximate Pattern Matching",
  journal = algo,
  volume = 13,
  number = "1/2",
  year = 1995,
  pages = "135--154",
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@INPROCEEDINGS( PW96,
  author = "C. A. Phillips and T. Warnow",
  title = "The Asymmetric Median Tree - A New model for Building Consensus Trees",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  year = 1996,
  pages = "234--252",
  series = lncs,
  number = 1075,
  publisher = svb,
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@INCOLLECTION( Pin85,
  author = "R. Y. Pinter",
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  booktitle = "Combinatorial Algorithms on Words",
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@ARTICLE( Pir92,
  author = "K. Pirklbauer",
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@INPROCEEDINGS( Plan99,
  author = "W. Plandowski",
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  year = 1999,
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@TECHREPORT( Pow89a,
  author = "P. A. Powell",
  title = "Sequence Similarity Algorithms",
  institution = "Univ. Minnesota, dept. CS",
  year = 1989,
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@TECHREPORT( Pow89b,
  author = "P. A. Powell",
  title = "Sequence Similarity Algorithms and a Linear Systolic {VLSI} Implementation",
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  year = 1989,
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@ARTICLE( PAD99,
  author = "D. R. Powell and L. Allison and T. I. Dix",
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@INPROCEEDINGS( PDAD98,
  author = "D. R. Powell and D. L. Dowe and L. Allison and T. I. Dix",
  title = "Discovering simple {DNA} sequences by compression.",
  booktitle = "Pacific Symposium on Biocomputing '98",
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  publisher = "World Scientic",
  year = 1998,
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@UNPUBLISHED( Pra75,
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% QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ

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% RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR

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  pages = "187--216",
)

@INPROCEEDINGS( Roc2000,
  author = "E. Rocke",
  title = "Using Suffix Trees for Gapped Motif Discovery",
  booktitle = proct#"11th "#cpm,
  address = montreal,
  editor = "R. Giancarlo and D. Sankoff",
  series = lncs,
  number = 1848,
  publisher = svb,
  year = 2000,
  pages = "335--349",
)

@INPROCEEDINGS( RT98,
  author = "E. Rocke and M. Tompa",
  title = "An Algorithm for Finding Novel Gapped Motifs in {DNA} Sequences",
  pages = "228--233",
  booktitle = proct#"2nd "#recomb,
  editor = "S. Istrail and P. Pevzner and M. Waterman",
  publisher = acmp,
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  year = 1998,
)

@ARTICLE( Rod82,
  author = "M. Rodeh",
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  journal = ieeetit,
  volume = 28,
  year = 1982,
  pages = "648--651",
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@ARTICLE( RPE91,
  author = "M. Rodeh and V. Pratt and S. Even",
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  journal = jacm,
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  number = 1,
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@INCOLLECTION( Roh88,
  author = "K. Rohde",
  title = "A multiple alignment routine for proteins: use, limits and experiences",
  booktitle = "Abstract of: Application of data bases and microcomputers in molecular biology, Jena",
  year = 1988,
  pages = 47,
  publisher = "?",
)

@BOOK( RK82,
  author = "A. Rosenfeld and A. Kak",
  title = "Digital picture processing",
  publisher = acap,
  address = newy,
  year = 1982,
)

@TECHREPORT( RW81,
  author = "R. Ross and K. Winklmann",
  title = "Repetitive strings are not context free",
  type = "Report",
  number = "CS-81-070",
  institution = "Washington State University, Pullman",
  year = 1981,
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@ARTICLE( RW82,
  author = "R. Ross and K. Winklmann",
  title = "Repetitive strings are not context free",
  journal = rairoit,
  volume = 16,
  number = 3,
  year = 1982,
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@ARTICLE( Rot92,
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  volume = 29,
  year = 1992,
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@ARTICLE( Roy92,
  author = "M. A. Roytberg",
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  journal = cabios,
  volume = 8,
  year = 1992,
  pages = "57--64",
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@ARTICLE( RT98b,
  author = "A. Rubinov and V. Timkovsky",
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  volume = 11,
  number = 3,
  year = 1998,
  pages = "456--467",
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@ARTICLE( RS99,
  author = "F. Ruskey and J Sawada",
  title = "An efficient algorithm for generating necklaces of fixed density",
  journal = sicomp,
  volume = 29,
  number = 2,
  year = 1999,
  pages = "671--684",
)

@INPROCEEDINGS( RS2000,
  author = "F. Ruskey and J Sawada",
  title = "An fast algorithm to generate necklaces",
  booktitle = proct#"11th "#soda,
  address = frisco,
  year = 2000,
  pages = "256--262",
)

@INPROCEEDINGS( RS2000b,
  author = "F. Ruskey and J Sawada",
  title = "Generating Necklaces and Strings with Forbidden Substrings",
  booktitle = proct#"6th "#cocoon,
  editor = "D.-Z. Du and P. Eades and V. Estivill-Castro and X. Lin and A. Sharma",
  series = lncs,
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  publisher = svb,
  address = "Sydney, Australia",
  year = 2000,
  pages = "330--339",
)

@INPROCEEDINGS( RP93,
  author = "P. Ru\u{z}i\u{c}ka and I. Pr\'{\i}vara",
  title = "On Tree Pattern Unification Problems",
  booktitle = proct#fct,
  year = 1993,
  editor = "Z. {\'E}sik",
  pages = "418--429",
  series = lncs,
  number = 710,
  publisher = svb,
  address = "Szeged, Hungary",
)

@INPROCEEDINGS( RT99,
  author = "W. L. Ruzzo and M. Tompa",
  title = "A Linear Time Algorithm for Finding All Maximal Scoring Subsequences",
  booktitle = "Seventh International Conference on Intelligent Systems for Molecular Biology",
  address = "Heidelberg, Germany",
  year = 1999,
  pages = "234--241",
)

@ARTICLE( Ryt80,
  author = "W. Rytter",
  title = "A correct preprocessing algorithm for {Boyer-Moore} string searching",
  journal = sicomp,
  volume = 9,
  number = 3,
  year = 1980,
  pages = "509--512",
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@INCOLLECTION( Ryt85,
  author = "W. Rytter",
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  series = "NATO Advanced Science Institutes, Series F",
  volume = 12,
  year = 1985,
  pages = "?--?",
  editor = "A. Apostolico and Z. Galil",
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@ARTICLE( Ryt86,
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  journal = ipl,
  volume = 23,
  number = 1,
  year = 1986,
  pages = "1--3",
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@ARTICLE( Ryt88,
  author = "W. Rytter",
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  journal = ipl,
  volume = 29,
  number = 2,
  year = 1988,
  pages = "71--74",
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@ARTICLE( Ryt89,
  author = "W. Rytter",
  title = "On the parallel transformations of regular expressions to nondeterministic finite automata",
  journal = ipl,
  volume = 31,
  number = 2,
  year = 1989,
  pages = "103--109",
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@INCOLLECTION( RD90,
  author = "W. Rytter and K. Diks",
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  booktitle = "Sequences: Combinatorics, Compression, Security and Transmission",
  year = 1990,
  pages = "92--105",
  editor = "R. Capocelli",
  publisher = svb,
)

% SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS

@INPROCEEDINGS( Sad98,
  author = "K. Sadakane",
  title = "A Fast Algorithm for Making Suffix Arrays and for {B}urrows-{W}heeler Transformation",
  booktitle = proc#dcc,
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  year = 1998,
  pages = "129--138",
)

@PHDTHESIS( Sag96,
  author = "M.-F. Sagot",
  title = "Ressemblance lexicale et structurale entre macromol{\'e}cules -- {F}ormalisation et approches combinatoires",
  school = "Universit\'e de Marne-la-Vall\'ee",
  year = 1996,
  note = "Rapport IGM 96-37",
)

@INPROCEEDINGS( Sag98,
  author = "M-F. Sagot",
  title = "Spelling approximate repeated or common motifs using a suffix tree",
  booktitle = proct#"3rd "#latin,
  address = "Campinas, Brazil",
  year = 1998,
  pages = "374--390",
  editor = "C. L. Lucchesi and A. V. Moura",
  series = lncs,
  number = 1380,
  publisher = svb,
)

@INPROCEEDINGS( SEVS95,
  author = "M.-F. Sagot and V. Escalier and A. Viari and H. Soldano",
  title = "Searching for repeated words in a text allowing for mismatches and gaps",
  booktitle = proct#"2nd "#wsp,
  pages = "101--116",
  address = "Valpara{\' \i}so, Chile",
  editor = "R. Baeza-Yates and U. Manber",
  year = 1995,
)

@INPROCEEDINGS( SM98,
  author = "M. Sagot and E. W. Myers",
  title = "Identifying Satellites in Nucleic Acid Sequences",
  booktitle = proct#"2nd "#recomb,
  editor = "S. Istrail and P. Pevzner and M. Waterman",
  publisher = acmp,
  address = "New York, NY",
  year = 1998,
  pages = "234--242",
)

@INPROCEEDINGS( SV96,
  author = "M.-F. Sagot and A. Viari",
  title = "A Double Combinatorial Approach to Discovering Patterns in Biological Sequences",
  booktitle = proct#"7th "#cpm,
  address = "Laguna Beach, CA",
  editor = "D. S. Hirschberg and E. W. Myers",
  year = 1996,
  pages = "186--208",
  series = lncs,
  number = 1075,
  publisher = svb,
)

@INPROCEEDINGS( SV97,
  author = "M.-F. Sagot and A. Viari",
  title = "Flexible identification of structural objects in nucleic acid sequences: palindromes, mirror repeats, pseudoknots and triple helices",
  booktitle = proct#"8th "#cpm,
  series = lncs,
  number = 1264,
  year = 1997,
  pages = "224--246",
  editor = "A. Apostolico and J. Hein",
  address = aarhus,
  publisher = svb,
)

@INPROCEEDINGS( SVS95,
  author = "M.-F. Sagot and A. Viari and H. Soldano",
  title = "Multiple sequence comparison: a peptide matching approach",
  booktitle = proct#"6th "#cpm,
  series = lncs,
  number = 937,
  year = 1995,
  pages = "366--385",
  editor = "Z. Galil and E. Ukkonen",
  address = espoo,
  publisher = svb,
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@ARTICLE( SVS97,
  author = "M.-F. Sagot and A. Viari and H. Soldano",
  title = "Multiple sequence comparison -- a peptide matching approach",
  pages = "115--137",
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  year = 1997,
  volume = 180,
  number = "1--2",
)

@INPROCEEDINGS( SV94,
  author = "S. C. Sahinalp and U. Vishkin",
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  publisher = svb,
  address = "Rome, Italy",
)

@INPROCEEDINGS( SV94b,
  author = "S.C. Sahinalp and U. Vishkin",
  title = "Symmetry breaking for suffix tree construction",
  booktitle = proct#"26th "#stoc,
  address = montreal,
  year = 1994,
  pages = "300--309",
)

@INPROCEEDINGS( SBHSMSUH94,
  author = "Y. Sakakibara and M. Brown and R. Hughey and I. Saira Mian and K. Sj{\"o}lander and R. C. Underwood and D. Haussler",
  title = "Recent Methods for {RNA} Modeling",
  editor = "M. Crochemore and D. Gusfield",
  number = 807,
  series = lncs,
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  booktitle = proct#"5th "#cpm,
  year = 1994,
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  address = asilo,
)

@TECHREPORT( SC70,
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  institution = "Institute of Electronic Communications Engineering of Japan",
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@INPROCEEDINGS( SC71,
  author = "H. Sakoe and S. Chiba",
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  booktitle = proct#"International Congress of Acoustics",
  year = 1971,
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  note = "Paper 20C",
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@ARTICLE( SMKE89,
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@ARTICLE( Sal80,
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  year = 1980,
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@BOOK( Sal89,
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@ARTICLE( Sam82,
  author = "H. Samet",
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@INPROCEEDINGS( SNW96,
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  title = "Docking of Conformationally Flexible Proteins",
  booktitle = proct#"7th "#cpm,
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  year = 1996,
  pages = "271--287",
  series = lncs,
  number = 1075,
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@ARTICLE( San72,
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@ARTICLE( San85,
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@INPROCEEDINGS( San92,
  author = "D. Sankoff",
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  editor = "A. Apostolico and M. Crochemore and Z. Galil and U. Manber",
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@INCOLLECTION( San97,
  author = "D. Sankoff",
  title ="The early introduction of dynamic programming into computational biology",
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@ARTICLE( San2000,
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@BOOK( SK83,
  author = "D. Sankoff and J. B. Kruskal",
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@BOOK( SK99,
  author = "D. Sankoff and J. B. Kruskal",
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@INPROCEEDINGS( SPMF97,
  author = "D. Sankoff and M.-N. Parent and I. Marchand and V. Ferretti",
  title = "On the {Nadeau-Taylor} theory of conserved chromosome segments",
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  number = 1264,
  year = 1997,
  pages = "262--274",
  editor = "A. Apostolico and J. Hein",
  address = aarhus,
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@ARTICLE( SR87,
  author = "M. Santibanez and K. Rohde",
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  volume = 3,
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@INPROCEEDINGS( Sat96,
  author = "T. Sato",
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  booktitle = proct#pscw0#"~'96",
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  address = ctu,
  note = "Collaborative Report DC--96--10",
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@ARTICLE( SM86,
  author = "W. Saurin and P. Marliere",
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@ARTICLE( Sav98,
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@ARTICLE( Sch88,
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@INPROCEEDINGS( SM87,
  author = "J. D. Schaffer and A. Morishima",
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@ARTICLE( Sch95b,
  author = "S. Schbath",
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  year = 1995,
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@ARTICLE( Sch97,
  author = "S. Schbath",
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@ARTICLE( Sch2000,
  author = "S. Schbath",
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@ARTICLE( SPT95,
  author = "S. Schbath and B. Prum and E. {de Turckheim}",
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@MASTERSTHESIS( Sch96,
  author = "R. Scheihing",
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@ARTICLE( SV88,
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  year = 1988,
  pages = "1253--1262",
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@INPROCEEDINGS( Sch95,
  author = "J. P. Schmidt",
  title = "All Highest Scoring Paths in Weighted Grid Graphs and Their Application to Finding All Approximate Repeats in Strings",
  booktitle = proct#"3rd Israel Symposium on Theory of Computing and Systems",
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  year = 1995,
  pages = "67--77",
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@ARTICLE( Sch98,
  author = "J. P. Schmidt",
  title = "All Highest Scoring Paths in Weighted Grid Graphs and Their Application to Finding All Approximate Repeats in Strings",
  journal = sicomp,
  year = 1998,
  volume = 27,
  number = 4,
  pages = "972--992",
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@PHDTHESIS( Sch86,
  author = "U. Schmidt",
  title = "Motifs {\'e}vitables dans les mots",
  type = "Th{\`e}se, Report LITP 86-63",
  school = "Universit{\'e}s Paris 6 et 7",
  year = 1986,
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@ARTICLE( Sch89,
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  number = 1,
  year = 1989,
  pages = "1--17",
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@ARTICLE( Sch88b,
  author = "P. Schnoebelen",
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  journal = scp,
  year = 1988,
  volume = 11,
  number = 2,
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@ARTICLE( SW92,
  author = "M. Sch{\"o}niger and M. S. Waterman",
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  volume = 54,
  year = 1992,
  pages = "521--536",
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@INPROCEEDINGS( Sch77,
  author = "A. Schroeder",
  title = "A Statistical Approach to the Study of Program Behavior via Reference String Analysis",
  booktitle = "Computer Performance",
  year = 1977,
  editor = "K. M. Chandy and M. Reiser",
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  publisher = noho,
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@ARTICLE( SAL91,
  author = "G. D. Schuler and S. F. Altschul and D. J. Lipman",
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  journal = proteinssf,
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  year = 1991,
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@INCOLLECTION( SS79,
  author = "G. E. Schulz and R. H. Schirmer",
  title = "Protein evolution",
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  year = 1979,
  pages = "166--205",
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@INPROCEEDINGS( Sch90,
  author = "K. U. Schulz",
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  booktitle = proc#"Word Equations and Related Topics",
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@ARTICLE( Sch93,
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  volume = 11,
  year = 1993,
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@BOOK( Sed88,
  author = "R. Sedgewick",
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  address = read,
  year = 1988,
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@ARTICLE( SG77,
  author = "J. Seiferas and Z. Galil",
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  journal = matsysthe,
  volume = 11,
  year = 1977,
  pages = "111--146",
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@TECHREPORT( SRR92,
  author = "R. C. Sekar and R. Ramesh and I. V. Ramakrishnan",
  title = "Adaptative pattern matching",
  type = "Report",
  institution = "Suny at Stony Brook",
  year = 1992,
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@INPROCEEDINGS( SRR92b,
  author = "R. C. Sekar and R. Ramesh and I. V. Ramakrishnan",
  title = "Adaptative pattern matching",
  booktitle = proct#"19th "#icalp,
  year = 1992,
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  editor = "W. Kuich",
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  address = "Wien, Austria",
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@ARTICLE( SRR95,
  author = "R. C. Sekar and R. Ramesh and I. V. Ramakrishnan",
  title = "Adaptative pattern matching",
  journal = sicomp,
  year = 1995,
  pages = "1207--1234",
  volume = 24,
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@ARTICLE( Sel77,
  author = "S. M. Selkow",
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  journal = ipl,
  volume = 6,
  number = 6,
  year = 1977,
  pages = "184--186",
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@ARTICLE( Sel74,
  author = "P. H. Sellers",
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  volume = 16,
  year = 1974,
  pages = "253--258",
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@ARTICLE( Sel74b,
  author = "P. H. Sellers",
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  journal = siappmat,
  volume = 26,
  year = 1974,
  pages = "787--793",
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@ARTICLE( Sel79,
  author = "P. H. Sellers",
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  volume = 76,
  year = 1979,
  pages = "3041",
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@ARTICLE( Sel80,
  author = "P. H. Sellers",
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  year = 1980,
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@ARTICLE( STSA2000,
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@INPROCEEDINGS( SKFTAAA2000,
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@ARTICLE( Shi83,
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@ARTICLE( SIPS2001,
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  year = 1998,
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)

@UNPUBLISHED( Sim84,
  author = "I. Simon",
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@INPROCEEDINGS( Sim87,
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)

@INCOLLECTION( Sim89,
  author = "I. Simon",
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@INPROCEEDINGS( Sim93,
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@INPROCEEDINGS( Sim94,
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  booktitle = "Results and Trends in Theoretical Computer Science",
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)

@TECHREPORT( Sim94b,
  author = "I. Simon",
  title = "String matching algorithms and automata",
  type = "Rapport",
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  institution = "Universit{\'e}s Paris 6 et 7, France",
  year = 1994,
)

@INPROCEEDINGS( SSR87,
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@ARTICLE( SS95,
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@ARTICLE( Smi94,
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@ARTICLE( SS90,
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@ARTICLE( SS92,
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@ARTICLE( SWF81,
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@INPROCEEDINGS( Smy98,
  author = "W. F. Smyth",
  title = "Repetitive perhaps, but not boring",
  pages = "64--73",
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  year = 1998,
  editor = "C. S. Iliopoulos",
  address = perth,
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@ARTICLE( Smy2000,
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@BOOK( Smy2003,
  author = "W. F. Smyth",
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@INPROCEEDINGS( Sna98,
  author = "V. Sn{\' a}{\v s}el",
  title = "Approximate string matching by fuzzy automata",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
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  year = 1998,
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)

@INPROCEEDINGS( SK97,
  author = "V. Sn{\' a}{\v s}el and T. Koutn{\' y}",
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  address = ctu,
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@ARTICLE( SM86b,
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@ARTICLE( SS79b,
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@ARTICLE( Spe86,
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@ARTICLE( Spe86b,
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@INPROCEEDINGS( Spe88,
  author = "J.-C. Spehner",
  title = "La reconnaissance des facteurs d'un langage fini dans un texte en temps lin{\'e}aire",
  booktitle = proct#"15th "#icalp,
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  address = "Tampere, Finland",
  year = 1988,
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@INPROCEEDINGS( Spe92,
  author = "H. Spencer",
  title = "Faster string functions",
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@ARTICLE( Spi99,
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@TECHREPORT( Sri86,
  author = "M. A. Sridhar",
  title = "Efficient algorithms for multiple pattern matching",
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  institution = "University of Wisconsin-Madison",
  year = 1986,
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@PHDTHESIS( Sri91,
  author = "Y.V. Srinivas",
  title = "Pattern matching:~A sheaf-theoretic approach",
  school = "University of California",
  year = 1991,
  type = "Ph. D. Thesis",
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@ARTICLE( Sta82,
  author = "R. Staden",
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@INPROCEEDINGS( Sta87,
  author = "I. Stadnyk",
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@ARTICLE( Ste82,
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@ARTICLE( S,
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@ARTICLE( Ste88,
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@INPROCEEDINGS( Ste74,
  author = "W. H. Stellhorn",
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@BOOK( Ste94,
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@TECHREPORT( Sto77,
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@BOOK( Sto92,
  author = "J. A. Storer",
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  author = "J. A. Storer and T. G. Szymanski",
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@INPROCEEDINGS( SG98,
  author = "J. Stoye and D. Gusfield",
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  author = "V.L. Strube de Lima and P.C. Abrahao and I. Paraboni",
  title = "Approaching the dictionary in the implementation of a natural language processing system: toward a distributed structure ",
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% TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

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% UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU

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% VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV

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@TECHrEPORT( Vil98,
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@INPROCEEDINGS( VBJRU2000,
  author = "J. Vilo and A. Br{\={a}}zma and I. Jonassen and A. Robinson and E. Ukkonen",
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@ARTICLE( KVi68,
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@ARTICLE( Vis85,
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@TECHREPORT( Vo86,
  author = "K. P. Vo",
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  institution = "AT{\&}T Bell Laboratories",
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)

% WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW

@ARTICLE( Wag73,
  author = "R. A. Wagner",
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@ARTICLE( Wag74,
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@INPROCEEDINGS( Wag75,
  author = "R. A. Wagner",
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@INCOLLECTION( Wag83,
  author = "R. A. Wagner",
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@ARTICLE( WF74,
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@ARTICLE( WS78,
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  number = 3,
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@ARTICLE( WCP93,
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@INPROCEEDINGS( WG96,
  author = "L. Wang and D. Gusfield",
  title = "Improved Approximation Algorithms for Tree Alignment",
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@ARTICLE( WKT93,
  author = "L. L. Wang and P. K. Ku and W. H. Tsai",
  title = "{Model-Based Guidance by Longest Common Subsequence Algorithms for Indoor Autonomous Vehicle Navigation}",
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)

@ARTICLE( WT94,
  author = "L. Wang and T. Jiang",
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  volume = 1,
  year = 1994,
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@BOOK( WSS99,
  editor = "J. T. L. Wang and B. A. Shapiro and D. Shasha",
  title = "Pattern Discovery in Biomolecular Data: Tools, Techniques and Applications",
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@INPROCEEDINGS( WZ99,
  author = "Z. Wang and K. Zhang",
  title = "Finding common RNA secondary structures from {RNA} sequences",
  booktitle = proct#"10th "#cpm,
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  editor = "M. Crochemore and M. Paterson",
  series = lncs,
  number = 1645,
  publisher = svb,
  year = 1999,
  pages = "258--269",
)

@UNPUBLISHED( WZJS89,
  author = "J. T. L. Wang and K. Zhang and K. Jeong and D. Shasha",
  title = "A system for approximate tree matching",
  note = "to appear in IEEE Trans. Knowledge Data Eng.",
  year = 1989,
)

@TECHREPORT( WZJS91,
  author = "J. T. L. Wang and K. Zhang and K. Jeong and D. Shasha",
  title = "Reference manual for {ATBE}: a tool for approximate tree matching",
  type = "Report",
  number = "TR551",
  institution = "Courant Institue of Mathematical Science, New York University, NY",
  year = 1991,
)

@INPROCEEDINGS( WZJS91b,
  author = "J. T. L. Wang and K. Zhang and K. Jeong and D. Shasha",
  title = "A tool for tree pattern matching",
  booktitle = proct#"1991 IEEE International Conference on Tools for AI",
  year = 1991,
  pages = "436--444",
  address = "San Jose, CA",
)

@ARTICLE( Wat83,
  author = "M. S. Waterman",
  title = "Sequence alignments in the neighborhood of the optimum with general application to dynamic programming",
  journal = pnasusa,
  volume = 80,
  year = 1983,
  pages = "3123--3124",
)

@ARTICLE( Wat84,
  author = "M. S. Waterman",
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  volume = 46,
  number = 4,
  year = 1984,
  pages = "473--501",
)

@ARTICLE( Wat86,
  author = "M. S. Waterman",
  title = "Multiple sequence alignments by consensus",
  journal = nucacires,
  volume = 14,
  year = 1986,
  pages = "9095--9102",
)

@INCOLLECTION( Wat89,
  author = "M. S. Waterman",
  title = "Sequence alignments",
  booktitle = "Mathematical methods for {DNA} sequences",
  year = 1989,
  pages = "53--92",
  editor = "M. S. Waterman",
  publisher = crcp,
  address = "Boca Raton, FL",
)

@BOOK( Wat91,
  author = "M. S. Waterman",
  title = "Mathematical methods for {DNA} sequences",
  publisher = crcp,
  address = "Boca Raton, FL",
  year = 1991,
)

@INPROCEEDINGS( Wat93,
  author = "M. S. Waterman",
  title = "Sequence Comparison and Statistical Significance in Molecular Biology",
  booktitle = proct#"1st "#esa,
  year = 1993,
  editor = "T. Lengauer",
  pages = 396,
  series = lncs,
  number = 726,
  publisher = svb,
  address = "Bad Honnef, Germany",
)

@ARTICLE( Wat94,
  author = "M. S. Waterman",
  title = "Parametric and ensemble sequence alignment",
  journal = bmathbiol,
  volume = 56,
  year = 1994,
  pages = "743--767",
)

@BOOK( Wat95,
  author = "M. S. Waterman",
  title = "Introduction to Computational Biology",
  publisher = "Chapman {\&} Hall",
  year = 1995,
)

@ARTICLE( WAG84,
  author = "M. S. Waterman and R. Arratia and D. J. Galas",
  title = "Pattern recognition in several sequences: consensus and alignment",
  journal = bmathbiol,
  volume = 46,
  year = 1984,
  pages = "515--527",
)

@ARTICLE( WB85,
  author = "M. S. Waterman and T. H. Byers",
  title = "A dynamic programming algorithm to find all solutions in a neighborhood of the optimum",
  journal = "Math. Biosci.",
  volume = 77,
  year = 1985,
  pages = "179--188",
)

@ARTICLE( WE87,
  author = "M. S. Waterman and M. Eggert",
  title = "A new algorithm for best subsequence alignments with applications to {tRNA-rRNA} comparisons",
  journal = jmolbiol,
  volume = 197,
  year = 1987,
  pages = "723--728",
)

@ARTICLE( WEL92,
  author = "M. S. Waterman and M. Eggert and E. Lander",
  title = "Parametric sequence comparisons",
  journal = pnasusa,
  volume = 89,
  year = 1992,
  pages = "6090--6093",
)

@ARTICLE( WGA87,
  author = "M. S. Waterman and L. Gordon and R. Arratia",
  title = "Phase transitions in sequence matches and nucleic acid structure",
  journal = pnasusa,
  volume = 84,
  year = 1987,
  pages = "1239--1243",
)

@ARTICLE( WJ90,
  author = "M. S. Waterman and R. Jones",
  title = "Consensus methods for {DNA} and protein sequence alignment",
  journal = methenzy,
  volume = 183,
  year = 1990,
  pages = "221--237",
)

@ARTICLE( WP84,
  author = "M. S. Waterman and M. D. Perlwitz",
  title = "Line geometries for sequence comparison",
  journal = bmathbiol,
  volume = 46,
  year = 1984,
  pages = "567--577",
)

@ARTICLE( WSB76,
  author = "M. S. Waterman and T. F. Smith and W. A. Beyer",
  title = "Some biological sequence metrics",
  journal = advmat,
  volume = 20,
  year = 1976,
  pages = "367--387",
)

@TECHREPORT( Wat94b,
  author = "B. W. Watson",
  title = "The performance of single-keyword and multiple-keyword pattern matching algorithms",
  type = "Computing Science Notes",
  number= "94/19",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  year = 1994,
)

@TECHREPORT( Wat94c,
  author = "B. W. Watson",
  title = "An introduction to the {FIRE} engine: {A C++} toolkit for {FI}nite automata and {R}egular {E}xpressions",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  type = "Report",
  year =1994,
)

@TECHREPORT( Wat94d,
  author = "B. W. Watson",
  title = "A taxonomy of finite automata construction algorithms",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  type = "Report",
  year =1994,
)

@TECHREPORT( Wat94e,
  author = "B. W. Watson",
  title = "A taxonomy of finite automata minimization algorithms",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  type = "Report",
  year =1994,
)

@INPROCEEDINGS( Wat96,
  author = "B. W. Watson",
  title = "The performance of single and multiple keyword pattern matching algorithms",
  booktitle = proct#"3rd "#wsp,
  pages = "280--294",
  publisher = cup,
  address = recife,
  editor = "N. Ziviani and R. Baeza-Yates and K. Guimar{\~a}es",
  year = 1996,
)

@INPROCEEDINGS( Wat96b,
  author = "B. W. Watson",
  title = "A collection of new regular grammar pattern matching algorithms",
  booktitle = proct#pscw0#"~'96",
  editor = "J. Holub",
  year = 1996,
  pages = "64--83",
  address = ctu,
  note = "Collaborative Report DC--96--10",
)

@INPROCEEDINGS( Wat96c,
  author = "B. W. Watson",
  title = "A New Regular Grammar Pattern Matching Algorithm",
  booktitle = proct#"4th "#esa,
  year = 1996,
  pages = "364--377",
  editor = "J. D{\'i}az and M. Serna",
  address = "Barcelona, Spain",
  series = lncs,
  number = 1136,
  publisher = svb,
)

@INPROCEEDINGS( Wat97a,
  author = "B. W. Watson",
  title = "A {B}oyer-{M}oore (or {W}atson-{W}atson) Type Algorithm for Regular Tree Pattern Matching",
  booktitle = proct#pscw#"~'97",
  editor = "J. Holub",
  year = 1997,
  pages = "33--38",
  address = ctu,
  note = "Collaborative Report DC--97--03",
)

@INPROCEEDINGS( Wat97b,
  author = "B. W. Watson",
  title = "{SPARE} {P}arts: {A} {C++} Toolkit for {S}tring {PA}ttern {RE}cognition",
  booktitle = proct#pscw#"~'97",
  editor = "J. Holub",
  year = 1997,
  pages = "47--60",
  address = ctu,
  note = "Collaborative Report DC--97--03",
)

@INPROCEEDINGS( Wat2000,
  author = "B. W. Watson",
  title = "A new family of {Commentz-Walter}-style multiple-keyword pattern matching algorithms",
  booktitle = proct#pscw#"~'2000, Bratislava, Slovakia",
  address = ctu,
  editor = "M. Bal{\'i}k and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--2000--03",
  year = 2000,
  pages = "71--76",
)

@INPROCEEDINGS( WW97,
  author = "B. W. Watson and R. E. Watson",
  title = "A New Family of String Pattern Matching Algorithms",
  booktitle = proct#pscw#"~'97",
  editor = "J. Holub",
  year = 1997,
  pages = "12--23",
  address = ctu,
  note = "Collaborative Report DC--97--03",
)

@INPROCEEDINGS( WW98,
  author = "B. W. Watson and R. E. Watson",
  title = "An early-retirement plan for the states",
  booktitle = proct#pscw#"~'98",
  address = ctu,
  editor = "J. Holub and M. {\v S}im{\' a}nek",
  note = "Collaborative Report DC--98--06",
  year = 1998,
  pages = "119--124",
)

@TECHREPORT( WZ92,
  author = "B. W. Watson and G. Zwaan",
  title = "A taxonomy of keyword pattern matching algorithms",
  type = "Computing Science Notes",
  number = "92/27",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  year = 1992,
)

@INPROCEEDINGS( WZ93,
  author = "B. W. Watson and G. Zwaan",
  title = "A taxonomy of keyword pattern matching algorithms",
  booktitle = "Proceedings Computing Science in the Netherlands 93",
  year = 1993,
  pages = "25--39",
  editor = "H. A. Wijshoff",
  address = "SION, Stichting Mathematish Centrum",
)

@TECHREPORT( WZ95,
  author = "B. W. Watson and G. Zwaan",
  title = "A taxonomy of sublinear multiple keyword pattern matching algorithms",
  type = "Computing Science Report",
  number = "95/13",
  institution = "Department of Mathematics and Computing Science, Eindhoven University of Technology, The Netherlands",
  year = 1995,
)

@ARTICLE( WZ96,
  author = "B. W. Watson and G. Zwaan",
  title = "A taxonomy of sublinear multiple keyword pattern matching algorithms",
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  year = 1996,
  pages = "85--118",
)

@INPROCEEDINGS( Wei73,
  author = "P. Weiner",
  title = "Linear pattern matching algorithm",
  booktitle = proct#"14th Annual IEEE Symposium on Switching and Automata Theory",
  year = 1973,
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@ARTICLE( Wen94,
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@INPROCEEDINGS( WW93,
  author = "Z.-X. Wen and Z.-Y. Wen",
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@INPROCEEDINGS( Wen99,
  author = "C. Wenk",
  title = "Applying an Edit Distance to the Matching of Tree Ring Sequences in Dendrochronology",
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  year = 1999,
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@ARTICLE( Wes76,
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@INPROCEEDINGS( WSR91,
  author = "C. T. White and R. K. Singh and P. B. Reintjes and J. Lampe and B. W. Erikson and W. D. Dettloff and V. L. Chi and S. F. Altschul",
  title = "{BioSCAN: A VLSI-Based System for Biosequences Analysis}",
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@ARTICLE( Wil88,
  author = "R. Wilber",
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@ARTICLE( WL83,
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@ARTICLE( WL84,
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@ARTICLE( Wil88b,
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@INPROCEEDINGS( Wit2000,
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@ARTICLE( WC76,
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@INPROCEEDINGS( Woo87,
  author = "J. A. Woods",
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@ARTICLE( vdW89b,
  author = "J. van der Woude",
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@PHDTHESIS( Wri89,
  author = "K. Wright",
  title = "Inductive inference of pattern languages",
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@ARTICLE( Wri94,
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@TECHREPORT( WM91,
  author = "S. Wu and U. Manber",
  title = "Fast text searching with errors",
  type = "Report",
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  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1991,
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@INPROCEEDINGS( WM92,
  author = "S. Wu and U. Manber",
  title = "Agrep -- a fast approximate pattern-matching tool",
  booktitle = proc#"USENIX Winter 1992 Technical Conference",
  year = 1992,
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@ARTICLE( WM92b,
  author = "S. Wu and U. Manber",
  title = "Fast text searching allowing errors",
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  volume = 35,
  number = 10,
  year = 1992,
  pages = "83--91",
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@TECHREPORT( WM94b,
  author = "S. Wu and U. Manber",
  title = "A fast algorithm for multi-pattern searching",
  type = "Report",
  number = "TR-94-17",
  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
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@TECHREPORT( WMM91,
  author = "S. Wu and U. Manber and E. W. Myers",
  title = "Improving the running times for some string-matching problems",
  type = "Report",
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  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
  year = 1991,
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@TECHREPORT( WMM92,
  author = "S. Wu and U. Manber and G. Myers",
  title = "A Sub-quadratic Algorithm for Approximate Limited Expression Matching",
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  institution = "Department of Computer Science, University of Arizona, Tucson, AZ",
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@ARTICLE( WMM95,
  author = "S. Wu and U. Manber and E. Myers",
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@ARTICLE( WMM96,
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% YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY

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@INPROCEEDINGS( Yok99,
  author = "H. Yokoo",
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% ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ

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  address = rutgers,
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  author = "K. Zhang and D. Shasha and J. T. L. Wang",
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@INPROCEEDINGS( ZL97,
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@INPROCEEDINGS( ZD96,
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  booktitle = proct#"19th "#sigir,
  editor = "H.-P. Frei and D. Harman and P. Sch{\"a}ble and R. Wilkinson",
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@ARTICLE( ZHW2001,
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  author = "J. Zobel and A. Moffat",
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@TECHREPORT( ZMR95,
  author = "J. Zobel and A. Moffat and K. Ramamohanarao",
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  author = "J. Zobel and A. Moffat and R. Sacks-{D}avis",
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@INPROCEEDINGS( ZMS93,
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@INPROCEEDINGS( ZMS93b,
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@ARTICLE( ZMWS95,
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  year = 1984,
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)

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@INPROCEEDINGS( DAg2002, 
 author = "S. De Agostino",
 title = "A Work-Optimal Parallel Implementation of Lossless Image Compression by Block Matching",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "1--8",
)

@INPROCEEDINGS( BSTIA2002,
 author = "K. Baba and A. Shinohara and M. Takeda and S. Inenaga and S. Arikawa",
 title = "A Note on Randomized Algorithm for String Matching with Mismatches",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "9--17",
)

@INPROCEEDINGS( Ben2002, 
 author = "K. Bent",
 title = "A Recursive Function for Calculating the Number of Legal Strings of Parentheses and for Calculating Catalan Numbers",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "18--27",
)

@INPROCEEDINGS( FSX2002, 
 author = "F. Fran{\v e}k and W. F. Smyth and X. Xiao",
 title = "A Note on {C}rochemore's Repetitions Algorithm a Fast Space-Efficient Approach",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "36--43",
)

@INPROCEEDINGS( Hyy2002,
 author = "H. Hyyr{\"o}",
 title = "A Bit-Vector Algorithm for Computing Levenshtein and {D}amerau Edit Distances",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "44--54",
)

@INPROCEEDINGS( IK2002,
 author = "C. S. Iliopoulos and M. Kurokawa",
 title = "String Matching with Gaps for Musical Melodic Recognition",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "55--64",
)

@INPROCEEDINGS( IMMPST2002, 
 author = "C. S. Iliopoulos and M. Mohamed and L. Mouchard and K. G. Perdikuri and W. F. Smyth and A. K. Tsakalidis",
 title = "String Regularities with Don't Cares",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "65--74",
)

@INPROCEEDINGS( Ine2002, 
 author = "S. Inenaga",
 title = "Bidirectional Construction of Suffix Trees",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "75--87",
)

@INPROCEEDINGS( SSK2002, 
 author = "T. Skopal and V. Sn\'a{\v s}el and M. Kr\'atk\'y",
 title = "Image Recognition Using Finite Automata",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "88--95",
)

@INPROCEEDINGS( CKP2002,
 author = "J.-M. Champarnaud and A. Khorsi and T. Parantho{\"e}n",
 title = "Split and join for minimizing: {B}rzozowski's algorithm ",
 booktitle = proct#pscc#"~'02",
 address = ctu,
 editor = "M. Bal\'\i {}k and M. {\v S}im\'{a}nek",
 note = "Research Report DC--2002--03",
 year = 2002,
 pages = "96--104",
)

%Conference
@STRING( pscc = "Prague Stringology Conference" )
%Address
@STRING( ctu = "Czech Technical University in Prague, Czech Republic" )
%Miscellaneous
@STRING( proct = "Proceedings of the " )

@PROCEEDINGS( PSC2008, 
 title = proct#pscc#" 2008, Prague, Czech Republic, September 1--3, 2008", 
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek", 
 publisher = "Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague", 
 year = "2008", 
 pages = "250",
 isbn = "978-80-01-04145-1", 
 bibsource = "http://www.stringology.org/papers/PSC2008.bib", 
)

@INPROCEEDINGS( PSC2008-1, 
 author = "Avraham N. Trahtman",
 title = "The Road Coloring and {{\v{C}}}erny Conjecture",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "1--12",
)

@INPROCEEDINGS( PSC2008-2, 
 author = "Mika{\"{e}}l Salson and Thierry Lecroq and Martine L{\'{e}}onard and Laurent Mouchard",
 title = "Dynamic {B}urrows-{W}heeler Transform",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "13--25",
)

@INPROCEEDINGS( PSC2008-3, 
 author = "Luigi Cinque and De Agostino, Sergio",
 title = "Lossless Image Compression by Block Matching on Practical Massively Parallel Architectures",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "26--34",
 )

@INPROCEEDINGS( PSC2008-4, 
 author = "Luigi Cinque and De Agostino, Sergio and Luca Lombardi",
 title = "Speeding up Lossless Image Compression: {E}xperimental Results on a Parallel Machine",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "35--45",
 )

@INPROCEEDINGS( PSC2008-5, 
 author = " Shmuel T. Klein and Dana Shapira",
 title = "Huffman Coding with Non-Sorted Frequencies",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "46--53",
 )

@INPROCEEDINGS( PSC2008-6, 
 author = "Matthias Gall{\'{e}} and Pierre Peterlongo and Fran{\c{c}}ois Coste",
 title = "In-place Update of Suffix Array while Recoding Words",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "54--67",
 )

@INPROCEEDINGS( PSC2008-7, 
 author = "Jie Lin and Yue Jiang and Don Adjeroh",
 title = "The Virtual Suffix Tree: {A}n Efficient Data Structure for Suffix Trees and Suffix Arrays",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "68--83",
 )

@INPROCEEDINGS( PSC2008-8, 
 author = "Satoshi Deguchi and Fumihito Higashijima and Hideo Bannai and Shunsuke Inenaga and Masayuki Takeda ",
 title = "Parameterized Suffix Arrays for Binary Strings",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "84--94",
 )

@INPROCEEDINGS( PSC2008-9, 
 author = "William F. Smyth and Shu Wang and Mao Yu",
 title = "An Adaptive Hybrid Pattern-Matching Algorithm on Indeterminate Strings ",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "95--107",
 )

@INPROCEEDINGS( PSC2008-10, 
 author = "Pavlos Antoniou and Maxime Crochemore and Costas S. Iliopoulos and Inuka Jayasekera and Gad M. Landau",
 title = "Conservative String Covering of Indeterminate Strings",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "108--115",
 )

@INPROCEEDINGS( PSC2008-11, 
 author = "S{\'{e}}bastien Rebecchi and Jean-Michel Jolion",
 title = "On the Uniform Distribution of Strings",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "116--125",
 )

@INPROCEEDINGS( PSC2008-12, 
 author = "Genevi{\`{e}}ve Paquin",
 title = "Infinite Smooth {L}yndon Words",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "126--139",
 )

@INPROCEEDINGS( PSC2008-13, 
 author = "Wataru Matsubara and Kazuhiko Kusano and Akira Ishino and Hideo Bannai and Ayumi Shinohara",
 title = "New Lower Bounds for the Maximum Number of Runs in a String",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "140--145",
 )

@INPROCEEDINGS( PSC2008-14, 
 author = "Simone Faro and Thierry Lecroq",
 title = "Efficient Variants of the Backward-Oracle-Matching Algorithm",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "146--160",
 )

@INPROCEEDINGS( PSC2008-15, 
 author = "Simon J. Puglisi and William F. Smyth and Munina Yusufu",
 title = "Fast Optimal Algorithms for Computing All the Repeats in a String",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "161--169",
 )

@INPROCEEDINGS( PSC2008-16, 
 author = "Domenico Cantone and Salvatore Cristofaro and Simone Faro",
 title = "New Efficient Bit-Parallel Algorithms for the $\delta$-Matching Problem with $\alpha$-Bounded Gaps in Musical Sequences",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "170--184",
 )

@INPROCEEDINGS( PSC2008-17, 
 author = "Kazuhiko Kusano and Wataru Matsubara and Akira Ishino and Ayumi Shinohara",
 title = "Average Value of Sum of Exponents of Runs in Strings",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "185--192",
 )

@INPROCEEDINGS( PSC2008-18, 
 author = "Pawe{\l} Baturo and Marcin Pi{\k{a}}tkowski and Wojciech Rytter",
 title = "Usefulness of Directed Acyclic Subword Graphs in Problems Related to Standard {S}turmian Words",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "193--207",
 )

@INPROCEEDINGS( PSC2008-19, 
 author = "Manolis Christodoulakis and Gerhard Brey",
 title = "Edit Distance with Single-Symbol Combinations and Splits",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "208--217",
 )

@INPROCEEDINGS( PSC2008-20, 
 author = "Tinus Strauss and Derrick G. Kourie and Bruce W. Watson",
 title = "A Concurrent Specification of an Incremental {DFA} Minimisation Algorithm",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "218--226",
 )

@INPROCEEDINGS( PSC2008-21, 
 author = "Wikus Coetser and Derrick G. Kourie and Bruce W. Watson",
 title = "On Regular Expression Hashing to Reduce {FA} Size",
 booktitle = proct#pscc#" 2008",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04145-1",
 year = 2008,
 pages = "227--241",
)

%Conference
@STRING( pscc = "Prague Stringology Conference" )
%Address
@STRING( ctu = "Czech Technical University in Prague, Czech Republic" )
%Miscellaneous
@STRING( proct = "Proceedings of the " )

@PROCEEDINGS( PSC2009, 
 title = proct#pscc#" 2009, Prague, Czech Republic, August 31--September 2, 2009", 
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 publisher = "Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague", 
 year = "2009", 
 isbn = "978-80-01-04403-2", 
 bibsource = "http://www.stringology.org/papers/PSC2009.bib", 
)

@INPROCEEDINGS( PSC2009-1, 
 author = "Navarro, Gonzalo",
 title = "Combining Text Compression and String Matching: The Miracle of Self-Indexing",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "1",
)

@INPROCEEDINGS( PSC2009-2, 
 author = "van Zijl, Lynette and Botha, Leendert",
 title = "Feature Extraction for Image Pattern Matching with Cellular Automata",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "3--14",
)

@INPROCEEDINGS( PSC2009-3, 
 author = "Crochemore, Maxime and Giambruno, Laura",
 title = "On-line construction of a small automaton for a finite set of words",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "15--28",
)

@INPROCEEDINGS( PSC2009-4, 
 author = "Cantone, Domenico and Faro, Simone and Giaquinta, Emanuele",
 title = "Adapting Boyer-Moore-Like Algorithms for Searching Huffman Encoded Texts",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "29--39",
)

@INPROCEEDINGS( PSC2009-5, 
 author = "Inenaga, Shunsuke and Bannai, Hideo",
 title = "Finding Characteristic Substrings from Compressed Texts ",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "40--54",
)

@INPROCEEDINGS( PSC2009-6, 
 author = "Klein, Shmuel T. and Meir, Moti",
 title = "Delta Encoding in a Compressed Domain",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "55--64",
)

@INPROCEEDINGS( PSC2009-7, 
 author = "Kuf{}leitner, Manfred",
 title = "On Bijective Variants of the   Burrows-Wheeler Transform",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "65--79",
)

@INPROCEEDINGS( PSC2009-8, 
 author = "Klein, Shmuel T. and Shapira, Dana",
 title = "On the Usefulness of Backspace",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "80--89",
)

@INPROCEEDINGS( PSC2009-9, 
 author = "Campanelli, Matteo and Cantone, Domenico and Faro, Simone and Giaquinta, Emanuele",
 title = "An Efficient Algorithm for Approximate Pattern Matching with Swaps",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "90--104",
)

@INPROCEEDINGS( PSC2009-10, 
 author = "Cicalese, Ferdinando and Fici, Gabriele and Lipt{\'{a}}k, Zsuzsanna",
 title = "Searching for Jumbled Patterns in Strings",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "105--117",
)

@INPROCEEDINGS( PSC2009-11, 
 author = "K{\"{u}}lekci, M. O{\u{g}}uzhan",
 title = "Filter Based Fast Matching of Long Patterns by Using SIMD Instructions",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "118--128",
)

@INPROCEEDINGS( PSC2009-12, 
 author = "Allali, Julien and Antoniou, Pavlos and Iliopoulos, Costas S. and Ferraro, Pascal and Mohamed, Manal",
 title = "Validation and Decomposition of Partially Occluded Images with Holes",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "129--136",
)

@INPROCEEDINGS( PSC2009-13, 
 author = "De Agostino, Sergio",
 title = "Compressing Bi-Level Images by Block Matching on a Tree Architecture",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "137--145",
)

@INPROCEEDINGS( PSC2009-14, 
 author = "Cleophas, Loek and Hemerik, Kees",
 title = "Taxonomies of Regular Tree Algorithms",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "146--159",
)

@INPROCEEDINGS( PSC2009-15, 
 author = "Janou{\v{s}}ek, Jan",
 title = "String Suffix Automata and Subtree Pushdown Automata",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "160--172",
)

@INPROCEEDINGS( PSC2009-16, 
 author = "Cleophas, Loek and Kourie, Derrick G. and Strauss, Tinus and Watson, Bruce W.",
 title = "On Minimizing Deterministic Tree Automata",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "173--182",
)

@INPROCEEDINGS( PSC2009-17, 
 author = "Smyczy{\'{n}}ski, Sebastian",
 title = "Constant-memory Iterative Generation of  Special Strings Representing Binary Trees",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "183--191",
)

@INPROCEEDINGS( PSC2009-18, 
 author = "Hyyr{\"{o}}, Heikki",
 title = "An input sensitive online algorithm for LCS computation",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "192--202",
)

@INPROCEEDINGS( PSC2009-19, 
 author = "Hirashima, Kazunori and Bannai, Hideo and Matsubara, Wataru and Ishino, Akira and Shinohara, Ayumi",
 title = "Bit-parallel algorithms for computing all the runs in a string",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "203--213",
)

@INPROCEEDINGS( PSC2009-20, 
 author = "Franek, Frantisek and Jiang, Mei",
 title = "Crochemore's repetitions algorithm revisited -- computing runs",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "214--224",
)

@INPROCEEDINGS( PSC2009-21, 
 author = "Leupold, Peter",
 title = "Reducing Repetitions",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "225--236",
)

@INPROCEEDINGS( PSC2009-22, 
 author = "Pi{\k{a}}tkowski, Marcin and Rytter, Wojciech",
 title = "Asymptotic Behaviour of the Maximal Number  of Squares in Standard Sturmian Words",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "237--248",
)

@INPROCEEDINGS( PSC2009-23, 
 author = "Iliopoulos, Costas S. and Miller, Mirka and Pissis, Solon P.",
 title = "Parallel algorithms for degenerate and weighted sequences derived from high throughput sequencing technologies",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "249--262",
)

@INPROCEEDINGS( PSC2009-24, 
 author = "Bari, Md. Faizul and Rahman, M. Sohel and Shahriyar, Rifat",
 title = "Finding all covers of an indeterminate string in $O(n)$ time on average",
 booktitle = proct#pscc#" 2009",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04403-2",
 year = 2009,
 pages = "263--271",
)

%Conference
@STRING( pscc = "Prague Stringology Conference" )
%Address
@STRING( ctu = "Czech Technical University in Prague, Czech Republic" )
%Miscellaneous
@STRING( proct = "Proceedings of the " )

@PROCEEDINGS( PSC2010, 
 title = proct#pscc#" 2010, Prague, Czech Republic, August 30--September 1, 2010", 
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 publisher = "Department of Theoretical Computer Science, Faculty of Information Technology, Czech Technical University in Prague", 
 year = "2010", 
 isbn = "978-80-01-04597-8", 
 bibsource = "http://www.stringology.org/papers/PSC2010.bib", 
)

@INPROCEEDINGS( PSC2010-1, 
 author = "Crochemore, Maxime and Gabbay, Dov M.",
 title = "Reactive Links to Save Automata States",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "1--8",
)

@INPROCEEDINGS( PSC2010-2, 
 author = "de Beijer, Noud and Cleophas, Loek and Kourie, Derrick G. and Watson, Bruce W.",
 title = "Improving Automata Efficiency by Stretching and Jamming",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "9--24",
)

@INPROCEEDINGS( PSC2010-3, 
 author = "Lahoda, Jan and {\v{Z}}{\v{d}}{\'{a}}rek, Jan",
 title = "Simple Tree Pattern Matching for Trees in the Prefix Bar Notation",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "25--36",
)

@INPROCEEDINGS( PSC2010-4, 
 author = "Cantone, Domenico and Faro, Simone and Giaquinta, Emanuele",
 title = "Approximate String Matching Allowing for Inversions and Translocations",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "37--51",
)

@INPROCEEDINGS( PSC2010-5, 
 author = "Clifford, Rapha{\"{e}}l and Popa, Alexandru",
 title = "({I}n)approximability Results for Pattern Matching Problems",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "52--62",
)

@INPROCEEDINGS( PSC2010-6, 
 author = "Cantone, Domenico and Cristofaro, Salvatore and Faro, Simone",
 title = "A Space-Efficient Implementation of the Good-Suffix Heuristic",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "63--75",
)

@INPROCEEDINGS( PSC2010-7, 
 author = "Berglund, Martin and Drewes, Frank",
 title = "On the Complexity of Variants of the $k$ Best Strings Problem",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "76--88",
)

@INPROCEEDINGS( PSC2010-8, 
 author = "Lancia, Giuseppe and Rizzi, Romeo and Schwartz, Russell",
 title = "Tiling Binary Matrices in Haplotyping: Complexity, Models and Algorithms",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "89--102",
)

@INPROCEEDINGS( PSC2010-9, 
 author = "Cinque, Luigi and De Agostino, Sergio and Lombardi, Luca",
 title = "Binary Image Compression via Monochromatic Pattern Substitution: Effectiveness and Scalability",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "103--115",
)

@INPROCEEDINGS( PSC2010-10, 
 author = "Klein, Shmuel T. and Shapira, Dana",
 title = "Practical Fixed Length {L}empel {Z}iv Coding",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "116--126",
)

@INPROCEEDINGS( PSC2010-11, 
 author = "Grabowski, Szymon and Bieniecki, Wojciech",
 title = "Tight and Simple Web Graph Compression",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "127--137",
)

@INPROCEEDINGS( PSC2010-12, 
 author = "Crochemore, Maxime and Iliopoulos, Costas and Kubica, Marcin and Radoszewski, Jakub and Rytter, Wojciech and Stencel, Krzysztof and Wale{\'{n}}, Tomasz",
 title = "New Simple Efficient Algorithms Computing  Powers and Runs in Strings",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "138--149",
)

@INPROCEEDINGS( PSC2010-13, 
 author = "Matsubara, Wataru and Ishino, Akira and Shinohara, Ayumi",
 title = "Inferring Strings from Runs",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "150--160",
)

@INPROCEEDINGS( PSC2010-14, 
 author = "Badkobeh, Golnaz and Crochemore, Maxime",
 title = "Bounded Number of Squares in Infinite Repetition-Constrained Binary Words",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "161--166",
)

@INPROCEEDINGS( PSC2010-15, 
 author = "Kusano, Kazuhiko and Shinohara, Ayumi",
 title = "Average Number of Runs and Squares in Necklace",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "167--177",
)

@INPROCEEDINGS( PSC2010-16, 
 author = "Bannai, Hideo and Giraud, Mathieu and Kusano, Kazuhiko and Matsubara, Wataru and Shinohara, Ayumi and Simpson, Jamie",
 title = "The Number of Runs in a Ternary Word",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "178--181",
)

@INPROCEEDINGS( PSC2010-17, 
 author = "Ketcha Ngassam, Ernest and Watson, Bruce W. and Kourie, Derrick G.",
 title = "Formal Characterizations of {FA}-based String Processors",
 booktitle = proct#pscc#" 2010",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04597-8",
 year = 2010,
 pages = "183--185",
)

@PROCEEDINGS( PSC2011, 
 title = proct#pscc#" 2011, Prague, Czech Republic, August 29--31, 2011", 
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 publisher = "Department of Theoretical Computer Science, Faculty of Information Technology, Czech Technical University in Prague", 
 year = "2011", 
 isbn = "978-80-01-04870-2", 
 bibsource = "http://www.stringology.org/papers/PSC2011.bib", 
)

@INPROCEEDINGS( PSC2011-1, 
 author = "Simone Faro and Thierry Lecroq",
 title = "2001--2010: Ten Years of Exact String Matching Algorithms",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "1--2",
)

@INPROCEEDINGS( PSC2011-2, 
 author = "Hannu Peltola and Jorma Tarhio",
 title = "Variations of Forward-{SBNDM}",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "3--14",
)

@INPROCEEDINGS( PSC2011-3, 
 author = "Justin Kourie and Bruce Watson and Loek Cleophas",
 title = "On Compile Time {K}nuth-{M}orris-{P}ratt Precomputation",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "15--29",
)

@INPROCEEDINGS( PSC2011-4, 
 author = "Kazuhito Hagio and Takashi Ohgami and Hideo Bannai and Masayuki Takeda",
 title = "Efficient Eager {XP}ath Filtering over {XML} Streams",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "30--44",
)

@INPROCEEDINGS( PSC2011-5, 
 author = "Mira Abraham and Haim J. Wolfson",
 title = "Inexact Graph Matching by ``Geodesic Hashing" for the Alignment of Pseudoknoted {RNA} Secondary Structures",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "45--58",
)

@INPROCEEDINGS( PSC2011-6, 
 author = "Martin Berglund",
 title = "Analyzing Edit Distance on Trees: Tree Swap Distance is Intractable",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "59--73",
)

@INPROCEEDINGS( PSC2011-7, 
 author = "Andrew Baker and Antoine Deza and Frantisek Franek",
 title = "A Parameterized Formulation for the Maximum Number of Runs Problem",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "74--82",
)

@INPROCEEDINGS( PSC2011-8, 
 author = "Maria Federico and Pierre Peterlongo and Nadia Pisanti and Marie-France Sagot",
 title = "Finding Long and Multiple Repeats with Edit Distance",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "83--97",
)

@INPROCEEDINGS( PSC2011-9, 
 author = "Frantisek Franek and Mei Jiang and Chia-Chun Weng",
 title = "An Improved Version of the Runs Algorithm Based on {C}rochemore's Partitioning Algorithm",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "98--105",
)

@INPROCEEDINGS( PSC2011-10, 
 author = "Marcin Pi\k {a}tkowski and Wojciech Rytter",
 title = "Computing the Number of Cubic Runs in Standard {S}turmian Words",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "106--120",
)

@INPROCEEDINGS( PSC2011-11, 
 author = "Tomohiro I and Shunsuke Inenaga and Hideo Bannai and Masayuki Takeda",
 title = "Inferring Strings from Suffix Trees and Links on a Binary Alphabet",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "121--131",
)

@INPROCEEDINGS( PSC2011-12, 
 author = "Johannes Bubenzer",
 title = "Minimization of Acyclic {DFA}s",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "132--146",
)

@INPROCEEDINGS( PSC2011-13, 
 author = "Shuhei Denzumi and Ryo Yoshinaka and Hiroki Arimura and Shin-ichi Minato",
 title = "Notes on Sequence Binary Decision Diagrams: Relationship to Acyclic Automata and Complexities of Binary Set Operations",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "147--161",
)

@INPROCEEDINGS( PSC2011-14, 
 author = "Rados{\l}aw G{\l}owinski and Wojciech Rytter",
 title = "Observations On Compressed Pattern-Matching with Ranked Variables in {Z}imin Words",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "162--172",
)

@INPROCEEDINGS( PSC2011-15, 
 author = "Michael Hirsch and Shmuel T. Klein and Yair Toaff",
 title = "Improving Deduplication Techniques by Accelerating Remainder Calculations",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "173--183",
)

@INPROCEEDINGS( PSC2011-16, 
 author = "Gabriele Fici and Thierry Lecroq and Arnaud Lefebvre and {\'{E}}lise Prieur-Gaston",
 title = "Computing {A}belian Periods in Words",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "184--196",
)

@INPROCEEDINGS( PSC2011-17, 
 author = "Kouji Shimohira and Shunsuke Inenaga and Hideo Bannai and Masayuki Takeda",
 title = "Computing Longest Common Substring/Subsequence of Non-linear Texts",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "197--208",
)

@INPROCEEDINGS( PSC2011-18, 
 author = "{\L}ukasz Mikulski and Marcin Pi{\k{a}}tkowski and Sebastian Smyczy{\'{n}}ski",
 title = "Algorithmics of Posets Generated by Words over Partially Commutative Alphabets",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "209--219",
)

@INPROCEEDINGS( PSC2011-19, 
 author = "Luigi Cinque and Sergio De Agostino and Luca Lombardi",
 title = "Binary Image Compression via Monochromatic Pattern Substitution: A Sequential Speed-Up",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "220--225",
)

@INPROCEEDINGS( PSC2011-20, 
 author = "Kalle Karhu",
 title = "Improving Exact Search of Multiple Patterns From a Compressed Suffix Array",
 booktitle = proct#pscc#" 2011",
 address = ctu,
 editor = "Jan Holub and Jan {\v{Z}}{\v{d}}{\'{a}}rek",
 isbn = "978-80-01-04870-2",
 year = 2011,
 pages = "226--231",
)