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Uses of SubstitutionMatrix in blinAlignment |
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Methods in blinAlignment with parameters of type SubstitutionMatrix | |
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void |
PairwiseAlignment.setSubstitutionMatrix(SubstitutionMatrix matrix)
Sets the substitution matrix to be used to the specified one. |
Constructors in blinAlignment with parameters of type SubstitutionMatrix | |
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PairwiseAlignment(double match,
double replace,
double insert,
double delete,
double gapExtend,
SubstitutionMatrix subMat)
Constructs a new Object with the given parameters based on the Needleman-Wunsch algorithm The alphabet of sequences to be aligned will be taken from the given substitution matrix. |
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