Serialized Form
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Package fr.umlv.gramofone.batch |
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Class fr.umlv.gramofone.batch.DoublonFasta extends java.lang.Object implements Serializable |
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Class fr.umlv.gramofone.batch.ParseFasta extends java.lang.Object implements Serializable |
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Class fr.umlv.gramofone.batch.ParseFlat extends java.lang.Object implements Serializable |
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Package fr.umlv.gramofone.commons |
serialVersionUID: -787795165674390565L
NDel
int NDel
NIns
int NIns
delPenalty
int delPenalty
insPenalty
int insPenalty
timeOut
int timeOut
pathBlast
java.lang.String pathBlast
patternFastaFile
java.lang.String patternFastaFile
networkFastaFile
java.lang.String networkFastaFile
choosePatternFastaFile
boolean choosePatternFastaFile
chooseNetworkFastaFile
boolean chooseNetworkFastaFile
chooseFastaAsPattern
boolean chooseFastaAsPattern
homologieThreshold
double homologieThreshold
logEValue
double logEValue
modeBatch
boolean modeBatch
multiSetHomologsPattern
boolean multiSetHomologsPattern
onlyFirstSolution
boolean onlyFirstSolution
interupted
boolean interupted
fastaFileDirectory
java.lang.String fastaFileDirectory
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Package fr.umlv.gramofone.graphs |
serialVersionUID: 4221348762459716321L
u
int u
v
int v
weight
float weight
id
int id
serialVersionUID: -6736303714629048676L
edges
java.util.HashMap<K,V> edges
edgesUnique
java.util.HashSet<E> edgesUnique
serialVersionUID: -5441829722634284668L
nodes
java.util.List<E> nodes
color2Nodes
java.util.HashMap<K,V> color2Nodes
node2Colors
java.util.HashMap<K,V> node2Colors
nodesWithoutColors
java.util.HashSet<E> nodesWithoutColors
edges
Edges edges
pattern
MyPattern pattern
Ndel
int Ndel
Nins
int Nins
network
CyNetwork network
originalCyNetwork
CyNetwork originalCyNetwork
connectedComponent
java.util.LinkedList<E> connectedComponent
previouslyDeletedProteins
java.util.Set<E> previouslyDeletedProteins
serialVersionUID: -8173667139838185591L
id2Occurence
java.util.HashMap<K,V> id2Occurence
colors2Occurence
java.util.HashMap<K,V> colors2Occurence
id2Color
java.util.HashMap<K,V> id2Color
color2Id
java.util.HashMap<K,V> color2Id
patternName
java.lang.String patternName
totalMotifSize
int totalMotifSize