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java.lang.Objectfr.umlv.gramofone.graphs.DefinedPatterns
public class DefinedPatterns
Class managing all predefined patterns, loaded from text files
| Constructor Summary | |
|---|---|
DefinedPatterns()
Constructor. |
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DefinedPatterns(java.lang.String fileName)
load a specific text file with patterns |
|
| Method Summary | |
|---|---|
MyPattern |
getPattern(java.lang.String specie,
java.lang.String patternName)
get the list of proteins for this specie and this pattern |
java.util.Collection<MyPattern> |
getPatterns()
Return all the patterns for all the species |
java.util.Collection<MyPattern> |
getPatterns(java.lang.String specie)
Return the patterns for a given specie |
java.util.LinkedList<java.lang.String> |
getSpecies()
return names of files |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
| Constructor Detail |
|---|
public DefinedPatterns()
public DefinedPatterns(java.lang.String fileName)
fileName - | Method Detail |
|---|
public java.util.Collection<MyPattern> getPatterns(java.lang.String specie)
specie -
public java.util.Collection<MyPattern> getPatterns()
public java.util.LinkedList<java.lang.String> getSpecies()
public MyPattern getPattern(java.lang.String specie,
java.lang.String patternName)
specie - patternName -
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